Protein Model on 5nfy_C_1_H_1
(TEMPLATE: 
5nfy
)Protein Model on 5nfy_C_1_H_1
(TEMPLATE: 5nfy
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(queryA) | C 1 (C) | polymer(polypeptide(L)) [514 aa] | Polyprotein 1ab :Q1T6X8_CVHSA | |
| 2 | b | H 1 (P) | polymer(polypeptide(L)) [133 aa] | Polyprotein 1ab :Q1T6X8_CVHSA | 3N 4V 5T 7L 8F 9K 10D 19H 20P 21T 22Q 23A 24P 25T 26H 27L 29V 38L 39C 40V 41D 47K 51Y 55I 60F 61K 62M 63N 64Y 65Q 66V 67N 69Y 95H 102G 104N 124Y 126D 127T 128P(E) 129N 130N 131T 192L 195M 196K 199V 200K 201I 217F 224Y 237Y (identity: 98.1 %/92.8 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:5nfy_C_1 identity=92.8% |
queryA 1:AENVTGLFKDCSKVITGLHPTQAPTHLSVDTKFKTEGLCVDIPGIPKDMTYRRLISMMGFKMNYQVNGYPNMFITREEAIRHVRAWIGFDVEGCHATREA: 100
:************* **************** ******************************************************************* *:
5nfy_C_1 8:AENVTGLFKDCSKIITGLHPTQAPTHLSVDIKFKTEGLCVDIPGIPKDMTYRRLISMMGFKMNYQVNGYPNMFITREEAIRHVRAWIGFDVEGCHATRDA: 107
SecStr : TT B B S TTT SSSTTS GGGEETTEE TTS S EEEE TT SB HHHHHHTGGGEEEEEEEEEEE SSB:
ExpBur :eeeeeeeeeebbeeeebbbeebbeeeeebbeebeeeeeeeeeeeeeeeeebebbbbbeeeeeeeeeeeeeebebeeeebeebbbbbbbbbbbbbebbeeb:
Contact : bbb bbbb bbbbbbbbb b bbbb b b b bbbbbbbb b b
queryA 101:VGTNLPLQLGFSTGVNLVAVPTGYVDTPNNTDFSRVSAKPPPGDQFKHLIPLMYKGLPWNVVRIKIVQMLSDTLKNLSDRVVFVLWAHGFELTSMKYFVK: 200
:*************************** *** * ** ************************************** ************************:
5nfy_C_1 108:VGTNLPLQLGFSTGVNLVAVPTGYVDTENNTEFTRVNAKPPPGDQFKHLIPLMYKGLPWNVVRIKIVQMLSDTLKGLSDRVVFVLWAHGFELTSMKYFVK: 207
SecStr : S EEEEEEEESSS EEE EEEEEESSSEEEEE EE SSSTTGGGSGGGTS HHHHHHHHHHHHHHHHTTT SS EEEESSHHHHHHHHTTTB :
ExpBur :eebebbbbbbbebeeebbbbbbbbbbbeeeeeeeebebebbeeeeeeebeebbeeeeebeebbeebbebbbeebeebbebbbbbbbeeebbbbbbebbbe:
Contact : b b b bbbbbb b bb bb
queryA 201:IGPERTCCLCDRRATCFSTASDTYACWHHSIGFDYVYNPFMIDVQQWGFTGNLQSNHDLYCQVHGNAHVASCDAIMTRCLAVHECFVKRVDWTIEYPIIG: 300
:*********** ******* ******* ** *************************** ******************************** ******:
5nfy_C_1 208:IGPERTCCLCDKRATCFSTSSDTYACWNHSVGFDYVYNPFMIDVQQWGFTGNLQSNHDQHCQVHGNAHVASCDAIMTRCLAVHECFVKRVDWSVEYPIIG: 307
SecStr : S B SSSSSB EEETTTTEEE TTT TT EE S EEEESGGGT SS HHHHHHTT SSS SSHHHHHHHHHHHHHHTTTTS TT S:
ExpBur :ebeeeebeebeebbbbbbeeeeebbbbeebeebbbbbbbbbbbbeeeeeeeebeebbeeebeeeeeeeebbbebebbbbbbbbbbbeeebeeebebeeee:
Contact :b b b b
queryA 301:DELKINAACRKVQHMVVKAALLADKFPVLHDIGNPKAIKCVPQADVEWKFYDAQPCSDKAYKIEELFYSYATHSDKFTDGVCLFWNCNVDRYPANSIVCR: 400
:*** * *********** ************************* ************************** * ********************* ****:
5nfy_C_1 308:DELRVNSACRKVQHMVVKSALLADKFPVLHDIGNPKAIKCVPQAEVEWKFYDAQPCSDKAYKIEELFYSYAIHHDKFTDGVCLFWNCNVDRYPANAIVCR: 407
SecStr :SHHHHHHHHHHHHHHHHHHHHHHT SEEEEES SS SSSS SSEEEEEESS STTGGGEEE HHHHTTT SSEEEEES SS SSEEEEE:
ExpBur :ebeebeebbeebbebbbebbbebeebebbbbbebbebeebbeeeebebebbbeeeeeeeeeebeebebeeeebeeebeebbbbbbebebeebbebbbbbb:
queryA 401:FDTRVLSNLNLPGCDGGSLYVNKHAFHTPAFDKSAFVNLKQLPFFYYSDSPCESHGKQVVSDIDYVPLKSATCITRCNLGGAVCRHHANEYRLYLDAYNM: 500
:************************************ **************** **************************** *******:
5nfy_C_1 408:FDTRVLSNLNLPGCDGGSLYVNKHAFHTPAFDKSAFTNLKQLPFFYYSDSPCEXXXXXXXXXXXYVPLKSATCITRCNLGGAVCRHHANEYRQYLDAYNM: 507
SecStr :E TT STTEEE SSS EEEESSSEEEE GGGGTTEEE EEE ----------- TTEEETT SSS SHHHHHHHHHHHHHHH:
ExpBur :bbbeeeeebbbebbeebbbbbbebbebbeeeeeebbeebeebeebbbbeeeee-----------eeeeeeeebbbeeeeeebebeebeeebeebeebbee:
queryA 501:MISAGFSLWVYKQFDTYNLWNTFTR: 525
:********* ***************:
5nfy_C_1 508:MISAGFSLWIYKQFDTYNLWNTFTR: 532
SecStr :HHHTTEEEEEETT SHHHHTTS :
ExpBur :beeebbbbbbbeebeeeebeebbee:
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[assembly_id:3]
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