CurrentView:HTML5 Change to:[JAVA] |
DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(DDX1_HUMAN) | Y 1 (CW) | polymer(polypeptide(L)) [540 aa] | ATP-dependent RNA helicase :G0RYG4_CHATD | |
2 | b | CA 1 (Ca) | polymer(polypeptide(L)) [117 aa] | Nucleolar protein 12 :G0S7E9_CHATD | 43L(V) 415V 416K(E) 418L 419S(I) 423M 425F(Y) 426P 427T(H) 428W(K) 429V(I) 430D(T) 431L(V) 432K(R) (identity: 28.6 %/37.7 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:8ia0_Y_1 identity=37.7% |
queryA 13:IAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQ: 112 :* * * ** * * ** * ****** ** *** : 8ia0_Y_1 26:ILDYVSSMGYEQPTPVQKSCLDIFRGNKDVVVEAVTGSGKTLAFLIPVVE--------------------------------------------------: 75 SecStr :HHHHHHHHT S HHHHHHHHHTTSS EEEEE TTSSHHHHHHHHHHH--------------------------------------------------: ExpBur :bbebbeeeeeeebeebbeebbeebbeeebbbbbbbbeebbebbbbbbbbb--------------------------------------------------: Contact : b queryA 113:SREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDL: 212 : : 8ia0_Y_1 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 213:GLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP--------------KALIVEPSREL: 298 : * * * ***: 8ia0_Y_1 76:---------------------------------------------------------------------------RLLRLDEAAKKHHVQAIIISPTREL: 100 SecStr :---------------------------------------------------------------------------HHHTSSS TTB EEEE SSHHH: ExpBur :---------------------------------------------------------------------------bbbeeeebbeebbbbbbbbbbbebb: queryA 299:AEQTLNNIKQFKKYIDNPKLRELL---------------------IIGG-VAARDQLSV-LENGVDIVVGTPGRLDDLVSTG--KLNLSQVRFLVLDEAD: 373 :* * * * * *** ** * * ** * ******* * * * * ** ****: 8ia0_Y_1 101:ASQIYNVLVSLIKF--HPESSELLQYAKSDEKRPATTKPVIVPQLLVGGTVKAAEDLSIFLRLSPNLLVGTPGRLAELLSSPYVKTPASSFEVLVMDEAD: 198 SecStr :HHHHHHHHHHHHHH--SHHHHTTTTSSSSSS SS EEEE SSS HHHHHHHHHHH SEEEE HHHHHHHHHSTTSB TTT EEEEESHH: ExpBur :beebbeebbebbee--beebeebbeebeeeeebeeeeebbbbbbebebeeeeeeebeebbebbbbbbbbbbbebbbebbebeebebeeebbebbbbbbbb: queryA 374:GLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLK----------GEDSVPDTVH--HVVVPVNPKTDRLWERLGK: 461 : ** * * * * * ** * * * * * * * * * * * * * *: 8ia0_Y_1 199:RLLDLGFSPELTRILGYLPKQRRTG------LFSASL-SDAVERLITVGMLYPHKITVRVXXXXXXXXXEERKTPMSLQMSYIVTPASHKIPALCQILEK: 291 SecStr :HHTSSTTHHHHHHHHHHS SS EEE------EEES T-TSSGGGTTTT SSEEEEE --------- SS SSEEEEEEE STTHHHHHHHHHTS: ExpBur :ebbbeebeeebeebbeebbeebbbb------bbbbbb-eebeeeeeebebeeeeeeebee---------eeebbeeebebbebebebbbbbbbebbbbee: Contact : bb bb b bbbbbbbb queryA 462:SHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERF: 561 : ** * * * * ** * * * * *** ** * * ***: 8ia0_Y_1 292:L-----------DPRP-----------------------------QRSIVFFST---CFAV-KYFARVLHGILPAG--YSIVSLHGKLEPHVREKNYERF: 345 SecStr :S-----------SS -----------------------------SEEEEE S ---HHHH-HHHHHHTTTTSSSS-- EEEEE TTS HHHHHHHHHHH: ExpBur :b-----------eeeb-----------------------------ebbbbbbeb---bbbb-ebbbebbeeeeeee--beebbbbeebeeeebeebbeeb: queryA 562:KKG-DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSR: 634 : * ** **** ** * ** * ** ** *** * ** * *: 8ia0_Y_1 346:VTATSPTVLLTTDIAARGLDIPQVDLVIQHDPPTDTKVFIHRCGRAGRAGRRGLSVVMLQPGREEGYVQLLEVR: 419 SecStr :HT S EEEEESGGGGSS SSEEEEEESS SSTTSHHHHHHHH SSSS EEEEEEE SSGGGTHHHHHHTT: ExpBur :eebeeebbbbbbebbbbbbebeebbbbbbbbbbeeebbbbbbbbbbbeeeeebbbbbbbbeeebebbeeebeee: |