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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(DDX1_HUMAN) | Y 1 (CW) | polymer(polypeptide(L)) [540 aa] | ATP-dependent RNA helicase :G0RYG4_CHATD | |
2 | b | A 1 (C1) | polymer(polyribonucleotide) | RNA (3341-MER) | 294P 296R 324I(V) 326G 346T 347P 348G 349R 361L(A) 374G(R) 380Y(F) 383F(E) 385N(T) 393Q(K) 419S(I) 420E(T) 422I(G) 514R(S) 519C 528Q(R) 546H 547G 550K(E) 552H 554R 557N 560R 572T 573D 574V(I) (identity: 53.3 %/37.7 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:8ia0_Y_1 identity=37.7% |
queryA 13:IAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQ: 112 :* * * ** * * ** * ****** ** *** : 8ia0_Y_1 26:ILDYVSSMGYEQPTPVQKSCLDIFRGNKDVVVEAVTGSGKTLAFLIPVVE--------------------------------------------------: 75 SecStr :HHHHHHHHT S HHHHHHHHHTTSS EEEEE TTSSHHHHHHHHHHH--------------------------------------------------: ExpBur :bbebbeeeeeeebeebbeebbeebbeeebbbbbbbbeebbebbbbbbbbb--------------------------------------------------: queryA 113:SREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDL: 212 : : 8ia0_Y_1 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 213:GLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP--------------KALIVEPSREL: 298 : * * * ***: 8ia0_Y_1 76:---------------------------------------------------------------------------RLLRLDEAAKKHHVQAIIISPTREL: 100 SecStr :---------------------------------------------------------------------------HHHTSSS TTB EEEE SSHHH: ExpBur :---------------------------------------------------------------------------bbbeeeebbeebbbbbbbbbbbebb: Contact : b b queryA 299:AEQTLNNIKQFKKYIDNPKLRELL---------------------IIGG-VAARDQLSV-LENGVDIVVGTPGRLDDLVSTG--KLNLSQVRFLVLDEAD: 373 :* * * * * *** ** * * ** * ******* * * * * ** ****: 8ia0_Y_1 101:ASQIYNVLVSLIKF--HPESSELLQYAKSDEKRPATTKPVIVPQLLVGGTVKAAEDLSIFLRLSPNLLVGTPGRLAELLSSPYVKTPASSFEVLVMDEAD: 198 SecStr :HHHHHHHHHHHHHH--SHHHHTTTTSSSSSS SS EEEE SSS HHHHHHHHHHH SEEEE HHHHHHHHHSTTSB TTT EEEEESHH: ExpBur :beebbeebbebbee--beebeebbeebeeeeebeeeeebbbbbbebebeeeeeeebeebbebbbbbbbbbbbebbbebbebeebebeeebbebbbbbbbb: Contact : b b bbbb b queryA 374:GLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLK----------GEDSVPDTVH--HVVVPVNPKTDRLWERLGK: 461 : ** * * * * * ** * * * * * * * * * * * * * *: 8ia0_Y_1 199:RLLDLGFSPELTRILGYLPKQRRTG------LFSASL-SDAVERLITVGMLYPHKITVRVXXXXXXXXXEERKTPMSLQMSYIVTPASHKIPALCQILEK: 291 SecStr :HHTSSTTHHHHHHHHHHS SS EEE------EEES T-TSSGGGTTTT SSEEEEE --------- SS SSEEEEEEE STTHHHHHHHHHTS: ExpBur :ebbbeebeeebeebbeebbeebbbb------bbbbbb-eebeeeeeebebeeeeeeebee---------eeebbeeebebbebebebbbbbbbebbbbee: Contact :b b b b b bb b queryA 462:SHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERF: 561 : ** * * * * ** * * * * *** ** * * ***: 8ia0_Y_1 292:L-----------DPRP-----------------------------QRSIVFFST---CFAV-KYFARVLHGILPAG--YSIVSLHGKLEPHVREKNYERF: 345 SecStr :S-----------SS -----------------------------SEEEEE S ---HHHH-HHHHHHTTTTSSSS-- EEEEE TTS HHHHHHHHHHH: ExpBur :b-----------eeeb-----------------------------ebbbbbbeb---bbbb-ebbbebbeeeeeee--beebbbbeebeeeebeebbeeb: Contact : b b b bb b b b b b queryA 562:KKG-DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSR: 634 : * ** **** ** * ** * ** ** *** * ** * *: 8ia0_Y_1 346:VTATSPTVLLTTDIAARGLDIPQVDLVIQHDPPTDTKVFIHRCGRAGRAGRRGLSVVMLQPGREEGYVQLLEVR: 419 SecStr :HT S EEEEESGGGGSS SSEEEEEESS SSTTSHHHHHHHH SSSS EEEEEEE SSGGGTHHHHHHTT: ExpBur :eebeeebbbbbbebbbbbbebeebbbbbbbbbbeeebbbbbbbbbbbeeeeebbbbbbbbeeebebbeeebeee: Contact : bbb |