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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(DDX1_HUMAN) | Y 1 (CW) | polymer(polypeptide(L)) [537 aa] | ATP-dependent RNA helicase :G0RYG4_CHATD | |
2 | b | A 1 (C1) | polymer(polyribonucleotide) | RNA (3341-MER) | 294P 296R 325G 326G 328A(K) 346T 348G 349R 352D(E) 360N(P) 361L(A) 374G(R) 380Y(F) 383F(E) 385N(T) 386R 393Q(K) 419S(I) 420E(T) 514R(S) 515T 519C 528Q(R) 547G 549R(L) 552H 553E(V) 554R 556Q(K) 557N 572T 573D 574V(I) (identity: 48.5 %/36.9 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:8i9z_Y_1 identity=36.9% |
queryA 13:IAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQ: 112 :* * * ** * * ** * ****** ** *** : 8i9z_Y_1 26:ILDYVSSMGYEQPTPVQKSCLDIFRGNKDVVVEAVTGSGKTLAFLIPVVE--------------------------------------------------: 75 SecStr :HHHHHHHH S HHHHHHHHHHHTT EEEEE TTS HHHHHHHHHHH--------------------------------------------------: ExpBur :bbebbeeeeeeebeebbeebbeebbeeebbbbbbebebebebbbbbbbbb--------------------------------------------------: queryA 113:SREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDL: 212 : : 8i9z_Y_1 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 213:GLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP--------------KALIVEPSREL: 298 : * * * ***: 8i9z_Y_1 76:---------------------------------------------------------------------------RLLRLDEAAKKHHVQAIIISPTREL: 100 SecStr :---------------------------------------------------------------------------HHHHSSS SSB EEEE SSHHH: ExpBur :---------------------------------------------------------------------------bbeeeeeebeebbbbbbbbbbbebb: Contact : b b queryA 299:AEQTLNNIKQFKKY-------------------IDNPKLRELLIIGG-VAARDQLSV-LENGVDIVVGTPGRLDDLVSTG--KLNLSQVRFLVLDEADGL: 375 :* * * * * * ** * * ** * ******* * * * * ** **** *: 8i9z_Y_1 101:ASQIYNVLVSLIKFHPESSELLQYAKSDEKRPATTKPVIVPQLLVGGTVKAAEDLSIFLRLSPNLLVGTPGRLAELLSSPYVKTPASSFEVLVMDEADRL: 200 SecStr :HHHHHHHHHHHHHTSTTHHHHHHHHSSSS SS EEEE SSS HHHHHHHHHHH SEEEE HHHHHHHHHSTT B TTS EEEEESHHHH: ExpBur :bebbeebbeebbeebeebeebeeebeeeeebeeeeeebbbbbbbebeeeeeeebeeebeebbbbbbbbbbebbbebbeeeebebeeebbebbbbbbbbeb: Contact : bb b b bb b bb b queryA 376:LSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLK----------GEDSVPDTVH--HVVVPVNPKTDRLWERLGKSH: 463 :* * * * * * ** * * * * * * * * * * * * * * : 8i9z_Y_1 201:LDLGFSPELTRILGYLPKQRRTG------LFSASL-SDAVERLITVGMLYPHKITVRVXXXXXXXXXEERKTPMSLQMSYIVTPASHKIPALCQILEKL-: 292 SecStr :TSGGGHHHHHHHHHHS SSSEEE------EEES -TTSGGGGGGT SSEEEEE --------- S TTEEEEEEE GGGHHHHHHHHHHT -: ExpBur :bbeebeeebeebbeebbeebebb------bbbbbb-eebeeebeebebeeeeeeeeee---------eeebbbeebebbebebebbbbbbbbbbbbeeb-: Contact : b b bb b bb queryA 464:IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKK: 563 : ** * * * * ** * * * * *** ** * * *** : 8i9z_Y_1 293:----------DPRP-----------------------------QRSIVFFST---CFAV-KYFARVLHGILPAG--YSIVSLHGKLEPHVREKNYERFVT: 347 SecStr :----------SS -----------------------------SEEEEE S ---HHHH-HHHHHHSSSSS SS-- EEEE TTS HHHHHHHHHHHHT: ExpBur :----------eeeb-----------------------------ebbbbbbeb---bebb-ebbbebbeeebbee--bebbbbbeeeeeeebeebbeebee: Contact : bb b b b b bbb bb queryA 564:G-DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSR: 634 : * ** **** ** * ** * ** ** *** * ** * *: 8i9z_Y_1 348:ATSPTVLLTTDIAARGLDIPQVDLVIQHDPPTDTKVFIHRCGRAGRAGRRGLSVVMLQPGREEGYVQLLEVR: 419 SecStr : S EEEEE GGGSSS SS EEEESS SSHHHHHHHHTTS SSSS EEEEEEE SSGGGTHHHHHHHH: ExpBur :beeebbbbbbebbbbebebeebbbbbbbbbbeebbbbbbbbbbbbbeeeebbbbbbbbeeebeebbeebeee: Contact : bbb |