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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(DDX1_HUMAN) | G 1 (CE) | polymer(polypeptide(L)) [462 aa] | RNA helicase :G0RYU9_CHATD | |
2 | b | A 1 (C1) | polymer(polyribonucleotide) | RNA (3341-MER) | 300E(L) 327V(A) 328A(N) 330R 335V(K) 338N(K) 520D(N) 548D(K) (identity: 12.5 %/33.9 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:8i9y_G_1 identity=33.9% |
queryA 4:FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA: 103 :*** * ** * ** ** * * *** ** ****** ** ** : 8i9y_G_1 113:FSELNLSEKTTKAIAEMGFTKMTEIQRRAIPPALAGKDVLGAAKTGSGKTLAFLIPAVEML---------------------------------------: 173 SecStr :SSSS HHHHHHHHHHT S HHHHHHHHHHHHT EEEE TTSSHHHHHHHHHHHHH---------------------------------------: ExpBur :beebebeeebeebbeebeeeebeebbeebbebbeeeebbbbbbeeeebbebbbbbbbbbbb---------------------------------------: queryA 104:IGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHV: 203 : : 8i9y_G_1 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 204:KFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLP-NAPKALIVEPSRELAEQT: 302 : * * * * * * **** * : 8i9y_G_1 173:-------------------------------------------------------------------------LSSLRFKPRNGTGAIVVTPTRELALQI: 199 SecStr :-------------------------------------------------------------------------HHHTT TTT EEEE S HHHHHHH: ExpBur :-------------------------------------------------------------------------beeeebeeeebbbbbbbbbbbbbbeeb: Contact : b queryA 303:LNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQ: 402 : ** *** * * ** ***** * * **** * * * * : 8i9y_G_1 200:FGVARELMKYHSQT---YGVVIGGANRRAEAEKLGKGVNLLIATPGRLLDHLQNTPFVFKNLKSLIIDEADRILEIGFEDEMRQIVKILP----------: 286 SecStr :HHHHHHHSSSSS ---EEEE TTS HHHHHHHHHH SEEEE HHHHHHHHHHS TT EEEE HHHHHHHT HHHHHHHHHHS ----------: ExpBur :bbbbebbbeebebe---ebbbbebeeeeebeeebeebbbbbbbbbbbbbebbeebebeeeebebbbbbbbbbbbeeebeeebeebbeebe----------: Contact : bb b b b queryA 403:VIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIK: 502 : * * * * ** * * * * * * * * ** * *: 8i9y_G_1 287:--------------KEDRQTMLFSATQTTKVEDLA----------------RISLRPGPLYINVDE-EKKYSTVEGLEQGYVVVEADKRFLLLFSF--LK: 353 SecStr :-------------- TT EEEEEES HHHHHHH----------------HHHS SS EEEE -S S EEEEE GGGHHHHHHHH--HH: ExpBur :--------------eeebbbbbbbeeeeeebeebb----------------eebbeeeeeebeeee-eeeeeeeeebebbbbebebeebbbbbbbb--be: queryA 503:EHKMDQAIIFCRTKIDCDNLEQY--FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV: 600 : * * * * * * *** * * * ********** ** * ** * : 8i9y_G_1 354:KMAKKKIIVFFSS---CNSVKYYSELLQYIDLP--------VLDLHGKQKQQKRTNTFFEFCNAKSGTLICTDVAARGLDIPQVDWIVQFDPPDDPRDYI: 442 SecStr :HTTTSEEEEEES ---HHHHHHHHHHHHHTT -------- EE TTS HHHHHHHHHHHHHSSSEEEEEEHHHHHHS SEEEE S SSHHHHH: ExpBur :ebeeebbbbbbbb---bebbebbbbbbeebebe--------bebbbbebebeebeebbeebeeeeeebbbbbbbbbeeeeebebebbbbbbbbebbeebb: Contact : b b queryA 601:HRIGRVGR: 608 :** ** *: 8i9y_G_1 443:HRVGRTAR: 450 SecStr :HHHHHHHS: ExpBur :bebbeebe: |