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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(DDX1_HUMAN) | E 1 (7) | polymer(polypeptide(L)) [390 aa] | Eukaryotic initiation factor 4A-III :IF4A3_HUMAN | |
2 | b | S 1 (E) | polymer(polyribonucleotide) | PM5 5' Exon | 294P 295S(T) 296R 325G 326G 328A(N) 329A(V) 330R(G) 334S(R) 346T 347P 348G 349R 352D 355S(R) 377S(N) 380Y(F) 383F(Q) 513C 514R(N) 515T 516K 547G 552H(K) 554R 572T 573D 574V 594D(N) (identity: 58.6 %/34.4 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:8c6j_E_1 identity=34.4% |
queryA 3:AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF: 102 : * ** * ** * * * ** * *** *** * * : 8c6j_E_1 39:TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQ----------------------------------------: 98 SecStr :SSGGGT HHHHHHHHHHT SS HHHHHHHHHHHTT EEE STTSSHHHHHHHHHHH----------------------------------------: ExpBur :ebeebebeeebbebbeeeeeeebbebbbebbebbeeeebbbbbbebbbbbbbbbbbbbbb----------------------------------------: queryA 103:AIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGH: 202 : : 8c6j_E_1 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 203:VKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP---------KALIVE: 293 : *** : 8c6j_E_1 99:-------------------------------------------------------------------------------------CLDIQVRETQALILA: 113 SecStr :-------------------------------------------------------------------------------------T TTS S EEEE : ExpBur :-------------------------------------------------------------------------------------ebeeeeeebbbbbbb: queryA 294:PSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQ: 393 :* **** * * *** * * * ***** * * ******* * * * * : 8c6j_E_1 114:PTRELAVQIQKGLLALGDYMN---VQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPP: 210 SecStr :SSHHHHHHHHHHHHHHTTTTT--- EEEE TTS HHHHHHHHHH SEEEE HHHHHHHHHTTSS TT EEEEESHHHHTSTTTHHHHHHHHHHS T: ExpBur :bbebbbebbbeebeebbeebe---bebbbbbbeeeeeebeeebeebbbbbbbbbebbbebbeeebbebeebebbbbbbbbebbeeebeeebebbeeebee: Contact :bbb bb bbb b bbbb b b b b b queryA 394:VTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILK: 493 : * ** **** * * * * * * ** * * * : 8c6j_E_1 211:AT------QVVLISATL-PHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAV--------ER------------------------EEWK--FDTLC: 269 SecStr :T ------EEEEE S - HHHHHGGGGT SS EEE HHHHS TTEEEEEEE -------- S------------------------HHHH--HHHHH: ExpBur :eb------bbbbbbbbb-beebbeebeeebeebbbbbbeeeebbbeebebebbeb--------ee------------------------eeeb--bebbe: queryA 494:GEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLP: 593 : * * ** *** ** * * * *** ** * * * ** *** *** * * ** **: 8c6j_E_1 270:DLYDTLTIT-----QAVIFCNTKRKVDWLTEKM---------REANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLP: 355 SecStr :HHHHHHTTS-----EEEEE SSHHHHHHHHHHH---------HHTT EE SSS HHHHHHHHHHHHHTS SEEEE GGGGSS TTEEEEEESS : ExpBur :eebeebeee-----bbbbbbeeeeebeebbebb---------eebeeebbbbbeeeebeebeebbeebeeeebebbbbbeebbbbbebeebebbbbbbbb: Contact : bbbb b b b bbb queryA 594:DEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE: 645 : * ***** ** * * ** * * * *: 8c6j_E_1 356:NNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDI-----EQYYSTQIDE: 402 SecStr :SSHHHHHHHHHTSS TT EEEEEEE TTTHHHHHHH-----HHHHT EE: ExpBur :eeeebbbbbbbbbbbeeeebebbbbbeeeeeeebeeb-----beebebebee: Contact :b |