[pdbjlvh2]Protein Model on 7oqb_T_1_U

Protein Model on 7oqb_T_1_U_1 (TEMPLATE: 7oqb )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(DDX1_HUMAN)	T 1 (p)	polymer(polypeptide(L)) [444 aa]	Pre-mRNA-processing ATP-dependent RNA helicase PRP5 :PRP5_YEAST
2	b		U 1 (2)	polymer(polyribonucleotide)	U2 snRNA	326G 327V(S) 329A(M) 330R(K) 333L(I) 334S(T) 337E(K) 356T(L) (identity: 12.5 %/30.5 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:7oqb_T_1 identity=30.5%

queryA        26:TDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCRAT: 125
                :* **    * *  * **     ******     *    *                                                             :
7oqb_T_1     280:TPIQSQALPAIMSGRDVIGISKTGSGKTISYLLPLLRQV-------------------------------------------------------------: 318
SecStr          : HHHHHHHHHHHTT  EEEE  TTS HHHHHHHHHHHHH-------------------------------------------------------------:    
ExpBur          :eebbbbeeebbbeebbbbebbeeeeebeebbeebeebbe-------------------------------------------------------------:    

queryA       126:KGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQ: 225
                :                                                                                                    :
7oqb_T_1      -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       226:ALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNA------------PKALIVEPSRELAEQTLNNIKQFKKYI: 313
                :                                                                         *  **  * **** *       *    :
7oqb_T_1     319:-------------------------------------------------------------KAQRPLSKHETGPMGLILAPTRELALQIHEEVTKFTEA-: 356
SecStr          :-------------------------------------------------------------HHS    TT    SEEEE SSHHHHHHHHHHHHHHHTT-:    
ExpBur          :-------------------------------------------------------------eeeeeeeeeebbbbbeeebeeeeebeeebeeeeeebee-:    

queryA       314:DNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVST--GK-LNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRL----QVIVC: 406
                :     *     **     *   *  *  *** ****  *      ** *      * * **** *   *            ** *   *      *    :
7oqb_T_1     357:-DTSIRSVCCTGGSEMKKQITDLKRGTEIVVATPGRFIDILTLNDGKLLSTKRITFVVMDEADRLFDLGFE----------PQITQIMKTVRPDKQCVLF: 445
SecStr          :- TT  EEEE SSS HHHHHHHHHT  SEEEE HHHHHHHHHHHHHTS  STT  EEEESSHHHHHHTT H----------HHHHHHHHSS TTSEEEEE:    
ExpBur          :-eeeeeebebbeeeeeeebeeeeeeebbbebbbbebbeeeeeeeeeeeeeeeebebeebeeebbbeeeebe----------ebeeeeeeebeeebbeeeb:    
Contact         :            bb bb  bb  b                  bb                                                        

queryA       407:SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKM: 506
                :***              * *          *   *                     * *                      *                  :
7oqb_T_1     446:SATFPN-KLRSFAVRVLHSPISITINSKGMVNENVKQKFRICHSEDEKFDNLVQLIHERSEFFXXXXXXXXXXXXXXXXXDA------------------: 526
SecStr          :ES   H-HHHHHHHHH SS EEEEESSS SS TTSEEEEEEESSHHHHHHHHHHHHHHGGGG -----------------  ------------------:    
ExpBur          :beeeee-ebeeeeeeebeeebeeeeeeeeeeeeebeeeeeebeeeeebeeeeeeeeeeeeeee-----------------ee------------------:    

queryA       507:DQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRV: 606
                :  ****      **         *               *      **  *** **      * ** *  **     *  **          ***  ** :
7oqb_T_1     527:-KAIIFVSSQNICDFISKKLLNAG---------IVTCAIHAGKPYQERLMNLEKFKREKNSILLCTEVLSRGLNVPEVSLVIIYNAVKTFAQYVHTTGRT: 616
SecStr          :- EEEEES HHHHHHHHHHHHHTT---------   EEE TTS HHHHHHHHHHHHHSTT EEEEEGGGTTT  S   SEEEESS  SSHHHHHHHHTTT:    
ExpBur          :-bebebbeeeeebeeeeeebeeee---------eeebeebeebeeeebeebeeebeeeeebebbbbbeeeeeeeeeebeebebeeeeeeeebbebbbebb:    

queryA       607:GRAERMGLAISLV: 619
                : *  * * ** * :
7oqb_T_1     617:ARGSRSGTAITLL: 629
SecStr          :  GGG  EEEEEE:    
ExpBur          :ebeeebeebebbb:

Protein Model on 7oqb_T_1_U_1 (TEMPLATE: 7oqb )

Input Residue Numbers for Focused Sites