CurrentView:HTML5 Change to:[JAVA] |
DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(DDX1_HUMAN) | AA 1 (5X) | polymer(polypeptide(L)) [583 aa] | Probable ATP-dependent RNA helicase DDX23 :DDX23_HUMAN | |
2 | b | A 1 (1) | polymer(polyribonucleotide) | U1 snRNA | 294P 295S(T) 296R 297E 323I(V) 324I 325G 326G 327V(I) 328A(S) 329A(R) 330R(E) 332Q 346T 348G 349R 352D (identity: 64.7 %/34.0 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:6qx9_AA_1 identity=34.0% |
queryA 1:MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGS: 100 : * * ** ** ** * * ******** ** ** : 6qx9_AA_1 390:IRSWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLL---------------------------------------: 450 SecStr : S TTTS HHHHHHHHHHT S HHHHHHHHHHTTT EEEE TTSSHHHHHHHHHH---------------------------------------: ExpBur :bbebeebebeeebeebbeeeebeebeebbbbbbbbbebbbbbbbbbeeeeebbbbbbbbbb---------------------------------------: queryA 101:AFAIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDK: 200 : : 6qx9_AA_1 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 201:GHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNA--------------: 286 : : 6qx9_AA_1 451:--------------------------------------------------------------------------------------VWITTLPKIDRIEE: 464 SecStr :--------------------------------------------------------------------------------------HHHHHS HHHH S: ExpBur :--------------------------------------------------------------------------------------bbbbebeeeeeeee: queryA 287:----PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSD: 382 : * * * * **** * * * * *** ** * * ** ***** * * ** ****** * : 6qx9_AA_1 465:SDQGPYAIILAPTRELAQQIEEETIKFGKPLG---IRTVAVIGGISREDQGFRLRMGXEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEP: 561 SecStr :S SEEEE SSHHHHHHHHHHHHHHHGGGT--- EEEE SSS HHHHHHHHHT - EEEE HHHHHHHHHTTSS TT EEEESSHHHHHHTT HH: ExpBur :eeeebbbbbbbbeeebbeebeeebeebbeebe---bebbbbbeeeeeeebeeebeee-bbbbbbbebbbebbeeeebebeebbbbbbbbbbebbeeeebe: Contact : bbbb bbbbbbbb b b bb b queryA 383:FINRMHNQIPQVTSDGKRLQVIVCSATLHSFDV--KKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPG--: 478 : * * * * * * * * *** * * ** : 6qx9_AA_1 562:DVQKILEHMPVSNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTAT---------MPPAV---------------ERLARSYLR----------RPAVV: 627 SecStr :HHHHHHTTS GGGS SSGGGG HHHHHHHHHTGGG EEEEEES --------- HHH---------------HHHHHHH S----------S EEE: ExpBur :ebeebeeebeeebbbeeeeebeeeeebeebbeebeebebbbbbbbee---------eeebb---------------eebbeebbe----------eebbb: queryA 479:----ANSPEMWSEAIKILKGEYAVR----AIKEHKMDQA-IIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFL: 569 : * * * * * * ** * * *** * ** * * * * * * * *: 6qx9_AA_1 628:YIGXAGKPHERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMG---------YNACTLXXXXXXXXREFALSNLKAGAKDIL: 718 SecStr :EE - HHHHSEEEEEE GGGHHHHHHHHHHT S EEEE SSHHHHHHHHHHHHHTT--------- EEE -------- HHHHHHHHHTS EE: ExpBur :eee-eeebbeebebebeebeeeebeeebeebbeeeeeebbbbbbeeeeebeebbeebeeee---------bebbee--------eeebbeebeeeeeebb: queryA 570:ICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHV: 630 : *** *** * * * * ***** *** * ** * * * : 6qx9_AA_1 719:VATDVXXXXIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTKEDSAVFYEL: 779 SecStr :EE ---- SEEEESS SSHHHHHHHHGGG SSSS EEEEEE GGGGGGHHHH: ExpBur :bbbee----eeeeebebbbbbbbbeebeebbebbeebbeeeeebebbbbbbeebeebbeeb: |