CurrentView:HTML5 Change to:[JAVA] |
DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(DDX1_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [444 aa] | Pre-mRNA-processing ATP-dependent RNA helicase PRP5 :PRP5_YEAST | |
2 | b | C 1 (A) | non-polymer(NI) | NICKEL (II) ION | 449N(H) (identity: 0.0 %/30.5 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:4lk2_A_1 identity=30.5% |
queryA 26:TDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCRAT: 125 :* ** * * * ** ****** * * : 4lk2_A_1 75:TPIQSQALPAIMSGRDVIGISKTGSGKTISYLLPLLRQV-------------------------------------------------------------: 113 SecStr : HHHHHHHHHHHTT EEEE TTS HHHHHHHHHHHHH-------------------------------------------------------------: ExpBur :ebbbbbbbbbbbbbebbbbbbeeebebbbbbbbbbbebb-------------------------------------------------------------: queryA 126:KGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQ: 225 : : 4lk2_A_1 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 226:ALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNA------------PKALIVEPSRELAEQTLNNIKQFKKYI: 313 : * ** * **** * * : 4lk2_A_1 114:-------------------------------------------------------------KAQRPLSKHETGPMGLILAPTRELALQIHEEVTKFTEA-: 151 SecStr :-------------------------------------------------------------HHS TT SEEEE SSHHHHHHHHHHHHHHHTT-: ExpBur :-------------------------------------------------------------eebeebeeeebbbbbbbbbbbeebbeebbeebbebbee-: queryA 314:DNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVST--GK-LNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRL----QVIVC: 406 : * ** * * * *** **** * ** * * * **** * * ** * * * : 4lk2_A_1 152:-DTSIRSVCCTGGSEMKKQITDLKRGTEIVVATPGRFIDILTLNDGKLLSTKRITFVVMDEADRLFDLGFE----------PQITQIMKTVRPDKQCVLF: 240 SecStr :- TT EEEE SSS HHHHHHHHHT SEEEE HHHHHHHHHHHHHTS STT EEEESSHHHHHHTT H----------HHHHHHHHSS TTSEEEEE: ExpBur :-eeebebbbbbeeeeeeebeeebeebbbbbbbbbebbbebbeeeeeebbebebbbbbbbbbbbebbeeebe----------eebeebbeebbeebbbbbb: queryA 407:SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKM: 506 :*** * * * * * * * : 4lk2_A_1 241:SATFPN-KLRSFAVRVLHSPISITINSKGMVNENVKQKFRICHSEDEKFDNLVQLIHERSEFFXXXXXXXXXXXXXXXXXDA------------------: 321 SecStr :ES H-HHHHHHHHH SS EEEEESSS SS TTSEEEEEEESSHHHHHHHHHHHHHHGGGG ----------------- ------------------: ExpBur :bbeeee-ebeebbeebbeeebebebeeeebbeeebebebebbeeeeebbebbbebbeebeeee-----------------eb------------------: Contact : b queryA 507:DQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRV: 606 : **** ** * * ** *** ** * ** * ** * ** *** ** : 4lk2_A_1 322:-KAIIFVSSQNICDFISKKLLNAG---------IVTCAIHAGKPYQERLMNLEKFKREKNSILLCTEVLSRGLNVPEVSLVIIYNAVKTFAQYVHTTGRT: 411 SecStr :- EEEEES HHHHHHHHHHHHHTT--------- EEE TTS HHHHHHHHHHHHHSTT EEEEEGGGTTT S SEEEESS SSHHHHHHHHTTT: ExpBur :-bbbbbbeeeeebeebeeebeeee---------bebbbbbeebeeeeeeeebeebeeeeebbbbbbbeebeebebeebebbbbbbbbeebbbbeebbebb: queryA 607:GRAERMGLAISLV: 619 : * * * ** * : 4lk2_A_1 412:ARGSRSGTAITLL: 424 SecStr : GGG EEEEEE: ExpBur :eeeeebbbbbbbb: |