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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(DDX1_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [376 aa] | ATP-DEPENDENT RNA HELICASE DHH1 :DHH1_YEAST | |
2 | b | B 1 (B) | polymer(polypeptide(L)) [30 aa] | DNA TOPOISOMERASE 2-ASSOCIATED PROTEIN PAT1 :PAT1_YEAST | 446V 448V(E) 449N(R) 450P(Q) 452T(L) 453D(H) 454R(C) 456W(N) 457E(T) 460G(S) 461K 514R(N) 515T(S) 517I(N) 518D(R) 520D(E) 521N(L) 522L 524Q(K) 525Y(K) 529Q(L) 544C(Y) 590V(F) 591T(D) (identity: 12.5 %/35.5 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:4brw_A_1 identity=35.5% |
queryA 3:AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF: 102 : * * * * ** * ** * * * * * *** ** ** * * * : 4brw_A_1 2:TFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQ------------------------------: 71 SecStr : GGGS HHHHHHHHHTT S HHHHHHHHHHHHT EEEE HHHHHHHHHHHHHH TTS S ------------------------------: ExpBur :ebeebebeeebeebbeeeeeeebeebbeebbebbeeeebbebbbebeeebbbbbbbbbbeebeeeeeebb------------------------------: queryA 103:AIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGH: 202 : : 4brw_A_1 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 203:VKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQT: 302 : * *** * **** **: 4brw_A_1 68:----------------------------------------------------------------------------------NKIQALIMVPTRELALQT: 85 SecStr :---------------------------------------------------------------------------------- S EEEE SSHHHHHHH: ExpBur :----------------------------------------------------------------------------------eebbbbbbbeeeebbeeb: queryA 303:LNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQ: 402 : * ** ** * * * ****** ** * ** **** ** * * *: 4brw_A_1 86:SQVVRTLGKHCG---ISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTH------Q: 176 SecStr :HHHHHHHTTTTT--- EEEE SSS HHHHHHHTTS SEEEE HHHHHHHHHTTSS TT EEEETTGGGGSSHHHHHHHHHHHTTS SS ------E: ExpBur :bebbeebbeebe---bebbbbbeeeeeeebeeebeeebbbbbbbbebbbebbeeeebebeebebbbbbbbeebbeeeeeeebeebbeebeeeb------b: queryA 403:VIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPD-TVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAI: 501 : *** * * * * * * * * * * * * : 4brw_A_1 177:SLLFSATF-PLTVDEFMDKHLHKPYEINLMEELTLKGITQYYAFVEERQKLHCLNTLFSKLQI-------------------------------------: 238 SecStr :EEEEESS - S HHHHHHH S EEEE S S B TTEEEEEEE GGGHHHHHHHHHHHS -------------------------------------: ExpBur :bbbbbbbb-bbebeebbeebbeeeeebeebeebbbeebebbebebeeeebeebbeebbeebeb-------------------------------------: Contact : b bbb bbb bb bb queryA 502:KEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVH: 601 : ****** * * ** * * ** * * ** * * * ***** * *** * * *: 4brw_A_1 239:-----NQAIIFCNSTNRVELLAKKITDLG---------YSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLH: 324 SecStr :-----SEEEEE SSHHHHHHHHHHHHHTT--------- EEEE TTS HHHHHHHHHHHHTTSSSEEEE SS TTEEEEEESS SSHHHHHH: ExpBur :-----ebbbbbbeeeeebeebbeebeeee---------eebeebbeebeeeeeeebeeebeeeebebbbbbeeeeeeeebeebbbbbbbbbbeebeebbe: Contact : bb bb bbb bb b b bb queryA 602:RIGRVGRAERMGLAISLV: 619 :**** ** **** * : 4brw_A_1 325:RIGRSGRFGHLGLAINLI: 342 SecStr :HH BS SS EEEEEEE: ExpBur :bbbbeeeeebebbbbbbb: |