Protein Model on 3pew_A_1_B_1
(TEMPLATE: 
3pew
)Protein Model on 3pew_A_1_B_1
(TEMPLATE: 3pew
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(DDX1_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [391 aa] | ATP-dependent RNA helicase DBP5 :DBP5_YEAST | |
| 2 | b | B 1 (B) | polymer(polyribonucleotide) | RNA (5'-R(P*UP*UP*UP*UP*UP*U)-3') | 294P 295S 296R 325G(P) 346T 347P 348G 349R(T) 352D 377S(Q) 378Q 379G 380Y(L) 383F(Q) 514R(A) 515T 516K 546H 547G 554R 572T 573D(N) 574V (identity: 69.6 %/35.0 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:3pew_A_1 identity=35.0% |
queryA 3:AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGG--GDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGS: 100
: * * * ** * * ** ** * * *** *** :
3pew_A_1 6:SFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTML---------------------------------------: 66
SecStr :SSTTS HHHHHHHHHTT S HHHHHHHHHHH SS EEEE TTS HHHHHHHHHH---------------------------------------:
ExpBur :bbeebebeeebbebbeebeeeebbebbeebbeebbeeeeebbbbbbebbeebebbbbbbbb---------------------------------------:
queryA 101:AFAIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDK: 200
: :
3pew_A_1 -1:----------------------------------------------------------------------------------------------------: -1
SecStr :----------------------------------------------------------------------------------------------------:
ExpBur :----------------------------------------------------------------------------------------------------:
queryA 201:GHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPN--------APKALIV: 292
: * * :
3pew_A_1 67:-------------------------------------------------------------------------------------TRVNPEDASPQAICL: 81
SecStr :-------------------------------------------------------------------------------------HH TTS S EEEE:
ExpBur :-------------------------------------------------------------------------------------ebbeeeeebbbbbbb:
queryA 293:EPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLL-SQGYSDFINRMHNQI: 391
: ****** *** * * ** ***** ** * ****** * ** * * :
3pew_A_1 82:APSRELARQTLEVVQEMGKFT---KITSQLIVPDSFEKNK----QINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFL: 174
SecStr : SSHHHHHHHHHHHHHHTTTS--- EEEESTTSS TTS---- B SEEEE HHHHHHHHHTT B TT EEEEETHHHHHHSTTHHHHHHHHHHHS:
ExpBur :bebbbbbebbbebbeebbeeb---ebebebbbeeeeeeee----ebebbbbbbbbebbbebbeeebbebeebebbbbbbbbbbbeeeebbeebbebeeeb:
Contact : bbb b bbbb b bbbb b
queryA 392:PQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKI: 491
:* * * *** * ** * * * :
3pew_A_1 175:PKDT------QLVLFSATFAD-AVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKF----------------------------------DV: 233
SecStr : TT ------EEEEEES H-HHHHHHHHHS S EEE GGGSS TTEEEEEEE SSTTHHH----------------------------------HH:
ExpBur :eeeb------bbbbbbbbbee-ebbeebeebbeebbebebeeeebbbeebebbebebeeeeebb----------------------------------eb:
queryA 492:LKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVT: 591
:* * * * *** ** * * ** * **** ** * * ** * * ****** * * * :
3pew_A_1 234:LTELYGVMTI-----GSSIIFVATKKTANVLY-------GKLKSEGHEVSI--LHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYD: 319
SecStr :HHHHHHHHTS-----SEEEEE S HHHHHHHH-------HHHHHTT EE--E TTS HHHHHHHHHHHHTTS SEEEE GGGSSS TTEEEEEESS:
ExpBur :bbebbebbee-----ebbbbbbeeeeebeebe-------eebeeeeeebbb--bbeeeebeebeebbeebeeeebebbbbbeebbbbbebeebbbbbbbb:
Contact : bbb bb b bbb
queryA 592:LPD------EKQNYVHRIGRVGRAERMGLAISLV: 619
:** * ***** ** * * *** *:
3pew_A_1 320:LPTLANGQADPATYIHRIGRTGRFGRKGVAISFV: 353
SecStr : B TTSSB HHHHHHHHTTSS TT EEEEEEE:
ExpBur :bbeeeeeebbbebbbbbbbbbbbeeeebbbbbbb:
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[assembly_id:1]
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