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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(DDX1_HUMAN) | K 1 (X) | polymer(polypeptide(L)) [390 aa] | EUKARYOTIC INITIATION FACTOR 4A-III :IF4A3_HUMAN | |
2 | b | G 1 (R) | polymer(polyribonucleotide) | RNA POLY-U-RIBONUCLEOTIDE | 294P 295S(T) 296R 324I 325G 326G 346T 347P 348G 349R 352D 380Y(F) 383F(Q) 514R(N) 515T 516K 546H 547G 554R 572T 573D 574V 594D(N) (identity: 78.3 %/34.4 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:2xb2_K_1 identity=34.4% |
queryA 3:AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF: 102 : * ** * ** * * * ** * *** *** * * : 2xb2_K_1 39:TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQ----------------------------------------: 98 SecStr : SGGG HHHHHHHHHTT S HHHHHHHHHHTTT EEEE STTSSHHHHHHHHHHH----------------------------------------: ExpBur :ebeebebeeebbebbeeeeeeebbebbbebbebbeeeebbbbbbebbbbbebbbbbbbbe----------------------------------------: queryA 103:AIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGH: 202 : : 2xb2_K_1 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 203:VKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP---------KALIVE: 293 : *** : 2xb2_K_1 99:-------------------------------------------------------------------------------------CLDIQVRETQALILA: 113 SecStr :-------------------------------------------------------------------------------------T TTS S EEEE : ExpBur :-------------------------------------------------------------------------------------bbeeeeeebbbbbbb: queryA 294:PSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQ: 393 :* **** * * *** * * * ***** * * ******* * * * * : 2xb2_K_1 114:PTRELAVQIQKGLLALGDYMN---VQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPP: 210 SecStr :SSHHHHHHHHHHHHHHTGGGT--- EEEE TTS HHHHHHHHHH SEEEE HHHHHHHHHTT S TT EEEEETHHHHSSTTTHHHHHHHHTTS S: ExpBur :bbebbbebbbebbeebbeebe---bebbbbbbeeeeeebeeebeebbbbbbbbbebbbebbeeebbebeebebbbbbbbbebbeeebeeebeebeeebee: Contact :bbb bbb bbbb b b b queryA 394:VTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILK: 493 : * ** **** * * * * * * ** * * * : 2xb2_K_1 211:AT------QVVLISATL-PHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAV--------ER------------------------EEWK--FDTLC: 269 SecStr :S ------EEEEEES - HHHHHGGGTT SS EEE TTT S TTEEEEEEEE--------SS------------------------HHHH--HHHHH: ExpBur :eb------bbbbbbbbb-beebbeebeebbeebbbbbbeeeebbeeebebbbbeb--------ee------------------------eeeb--bebbb: queryA 494:GEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLP: 593 : * * ** *** ** * * * *** ** * * * ** *** *** * * ** **: 2xb2_K_1 270:DLYDTLTIT-----QAVIFCNTKRKVDWLTEKM---------REANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLP: 355 SecStr :HHHHHHTTS----- EEEE S HHHHHHHHHHH---------HHTS EEE TTS HHHHHHHHHHHHHTSS EEEE GGGTSS TT EEEESS : ExpBur :ebbebbeeb-----bbbbbbeeeebbeebbeeb---------eeeeeebbbbbeebebeebeebbeebeeeebebbbbbebbbbbbebeebbbbbbbbbb: Contact : bbb bb b bbb queryA 594:DEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE: 645 : * ***** ** * * ** * * * *: 2xb2_K_1 356:NNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDI-----EQYYSTQIDE: 402 SecStr :SSHHHHHHHHTTSSGGG EEEEEEEEGGGHHHHHHH-----HHHTT EE: ExpBur :eeeebbbbbbbbbbbeeeebbbbbbbeeeeeeebeeb-----beebebebee: Contact :b |