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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(DDX1_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [366 aa] | ATP-DEPENDENT RNA HELICASE EIF4A :IF4A_YEAST | |
2 | b | B 1 (B) | polymer(polypeptide(L)) [366 aa] | ATP-DEPENDENT RNA HELICASE EIF4A :IF4A_YEAST | 296R 297E 348G 349R 352D 356T(R) 378Q(S) 379G 382D(E) 383F(Q) 516K(R) 520D(E) 546H(Y) 548D 549R(L) 550K(P) 552H(Q) 553E 556Q(T) 557N(I) 560R(E) 565D(S) (identity: 36.4 %/34.7 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:2vsx_A_1 identity=34.7% |
queryA 25:PTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCRA: 124 :* ** * * * *** * * **** *** * * * : 2vsx_A_1 45:PSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQ----------------------------------------------------: 92 SecStr : HHHHHHHHHHHTT EEEE TTSSHHHHHHHHHHHH TT S ----------------------------------------------------: ExpBur :beebbbebbbbbbeeebbbbbbeeeeebebbbbbbbbbebeeeeebbb----------------------------------------------------: queryA 125:TKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKN: 224 : : 2vsx_A_1 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 225:QALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLII: 324 : ** ** * **** * * *: 2vsx_A_1 90:-------------------------------------------------------------APQALMLAPTRELALQIQKVVMALAFHMD---IKVHACI: 125 SecStr :-------------------------------------------------------------S EEEE SSHHHHHHHHHHHHHHTSSS --- EEEE : ExpBur :-------------------------------------------------------------bbbbbbbbbeeebbeebbebbeebbeebe---bebebbe: Contact : bb queryA 325:GGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMH: 424 : * ******** * ***** ** * * * * ** *** ** * * : 2vsx_A_1 126:XXXXXXXXXXGLRDA-QIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTT------QVVLLSATMPN-DVLEVTTKFMR: 217 SecStr :---------- SS -SEEEE HHHHHHHHHTT S TT EEEEESHHHHHHTT HHHHHHHHHHS TT ------EEEEEES H-HHHHHHHHH S: ExpBur :----------ebeeb-bbbbbbbbebbebbeeeebebeebebbbbbbbbebbeeebeeebbebbeebeeeb------bbbbbbeebee-ebeebbeebbe: Contact : bb b b bb bb queryA 425:FPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ: 524 : * * * * * * * * ** *** * * : 2vsx_A_1 218:NPVRILVKKDELTLEGIKQFYVNVEEE-------------------------------EYKYECLTDLYDSISV--------TQAVIFCNTRRKVEELTT: 278 SecStr :S EEEE STTEEEEEEEEESG-------------------------------GGHHHHHHHHHHHS --------S EEEEESSHHHHHHHHH: ExpBur :ebbebebeeeeeebeebebbeeebeee-------------------------------eebbeebbebeeebeb--------ebbbbbbeeeebbeebbe: Contact : b b queryA 525:YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE: 622 : * * ** * * * ** ** ***** * *** ** * ** ***** * ** * *: 2vsx_A_1 279:KL---------RNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRXXXXXXKGVAINFVTNE: 367 SecStr :HH---------HHTT EEEE TTS HHHHHHHHHHHTTTS SEEEEESGGGSS S EEEESS SSGGGGHHHH ------ EEEEEEEESS: ExpBur :eb---------eeeeeebbbbbeebeeeeeeebbeebeeeebebbbbbbebbeebeeeebebbbbbbbbeeeebbeebbbe------eeebbbbbbee: Contact : b bbb bb bb b b |