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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(DDX1_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [366 aa] | ATP-DEPENDENT RNA HELICASE EIF4A :IF4A_YEAST | |
2 | b | E 1 (A) | non-polymer(AMP) | ADENOSINE MONOPHOSPHATE | 29Q 48T(S) 49G 50S(T) 51G 52K 53T 54G (identity: 75.0 %/34.7 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:2vso_A_1 identity=34.7% |
queryA 25:PTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCRA: 124 :* ** * * * *** * * **** *** * * * : 2vso_A_1 45:PSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQ----------------------------------------------------: 92 SecStr : HHHHHHHHHHHTT EEEE TTSSHHHHHHHHHHHH TT S ----------------------------------------------------: ExpBur :beebbbebbbbbbeeebbbbbbeeeeebebbbbbbbbbebeeeeebbb----------------------------------------------------: Contact : b bbbbbbb queryA 125:TKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKN: 224 : : 2vso_A_1 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 225:QALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLII: 324 : ** ** * **** * * *: 2vso_A_1 90:-------------------------------------------------------------APQALMLAPTRELALQIQKVVMALAFHMD---IKVHACI: 125 SecStr :-------------------------------------------------------------S EEEE SSHHHHHHHHHHHHHHTTTS --- EEEE : ExpBur :-------------------------------------------------------------bbbbbbbbbeeebbeebbebbeebbeebe---bebebbe: queryA 325:GGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMH: 424 : * ******** * ***** ** * * * * ** *** ** * * : 2vso_A_1 126:XXXXXXXXXXGLRDA-QIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTT------QVVLLSATMPN-DVLEVTTKFMR: 217 SecStr :---------- SS -SEEEE HHHHHHHHHTT S TT EEEEETHHHHHHTT HHHHHHHHHHS TT ------EEEEEES H-HHHHHHHHH S: ExpBur :----------ebeeb-bbbbbbbbebbebbeeeebebeebebbbbbbbbebbeeebeeebbebbeebeeeb------bbbbbbbebee-ebeebbeeebe: queryA 425:FPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ: 524 : * * * * * * * * ** *** * * : 2vso_A_1 218:NPVRILVKKDELTLEGIKQFYVNVEEE-------------------------------EYKYECLTDLYDSISV--------TQAVIFCNTRRKVEELTT: 278 SecStr :S EEEE SSSSEEEEEEEESG-------------------------------GGHHHHHHHHHHHS --------S EEEE SSHHHHHHHHH: ExpBur :ebbebebeeeeeebeebebbebebeee-------------------------------eebbeebeebeeebeb--------ebbbbbbeeeebbeebbe: queryA 525:YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE: 622 : * * ** * * * ** ** ***** * *** ** * ** ***** * ** * *: 2vso_A_1 279:KL---------RNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRXXXXXXKGVAINFVTNE: 367 SecStr :HH---------HHTT EEEE TTS HHHHHHHHHHHHTTS SEEEE STTSSS S EEEESS SSGGGHHHHS ------ EEEEEEEGG: ExpBur :eb---------eeeeeebbbbbeebeeeebeebbeebeeeebebbbbbbebbeebeeeebebbbbbbbbeeeebbbebbbe------eeebbbbbbee: |