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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(DDX1_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [203 aa] | TRANSLATION INITIATION FACTOR 4A :IF4A_YEAST | |
2 | b | B 1 (A) | non-polymer(SO4) | SULFATE ION | 48T(S) 49G 50S(T) 51G 52K 53T (identity: 66.7 %/35.9 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:1qde_A_1 identity=35.9% |
queryA 25:PTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCRA: 124 :* ** * * * *** * * **** *** * * * : 1qde_A_1 37:PSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQ----------------------------------------------------: 84 SecStr : HHHHHHHHHHHTT EEEE TTSSHHHHHHHHHHHH TT S ----------------------------------------------------: ExpBur :beebbbbbbbbbbeeebbbbebeeeeebbbbbbbbbbeebeeeeebbb----------------------------------------------------: Contact : bbbbbb queryA 125:TKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKN: 224 : : 1qde_A_1 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 225:QALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLII: 324 : ** ** * **** * * *: 1qde_A_1 82:-------------------------------------------------------------APQALMLAPTRELALQIQKVVMALAFHMD---IKVHACI: 117 SecStr :-------------------------------------------------------------S EEEE SSHHHHHHHHHHHHHHTTTS --- EEEE : ExpBur :-------------------------------------------------------------bbbbbbbbbeeebbeebeebbeebbeebe---bebebbe: queryA 325:GGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMH: 424 :* * ******** * ***** ** * * * * ** *** ** * * : 1qde_A_1 118:GXXXXXXXXXGLRDA-QIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTT------QVVLLSATMPN-DVLEVTTKFMR: 209 SecStr :---------- TT -SEEEE HHHHHHHHHTTSS TT EEEEETHHHHHHTT HHHHHHHHHHS TT ------EEEEEESS H-HHHHHHHHH S: ExpBur :----------ebeeb-bbbbbbbeebbebbeeeebebeebebbbbbbbbebbeeeeeeebbebbeebeeeb------bbbbbbbeeee-ebeebbeebbe: queryA 425:FPTWV: 429 : * : 1qde_A_1 210:NPVRI: 214 SecStr :S EEE: ExpBur :ebbeb: |