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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(DDX1_HUMAN) | B 1 (B) | polymer(polypeptide(L)) [380 aa] | YEAST INITIATION FACTOR 4A :IF4A_YEAST | |
2 | b | A 1 (A) | polymer(polypeptide(L)) [215 aa] | YEAST INITIATION FACTOR 4A :IF4A_YEAST | 296R 325G 326G 327V(T) 328A(S) (identity: 60.0 %/35.6 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:1fuu_B_1 identity=35.6% |
queryA 25:PTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCRA: 124 :* ** * * * *** * * **** *** * * * : 1fuu_B_1 44:PSAIQQRAIUPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQ----------------------------------------------------: 91 SecStr : TTHHHHHHHHHHT EEE SSHHHHHHHHHHHHHH TT S ----------------------------------------------------: ExpBur :beebbbbbbbbbbeeebbbbbbeeeeebbbbbbbbbbeebeeeeeebb----------------------------------------------------: queryA 125:TKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKN: 224 : : 1fuu_B_1 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 225:QALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLII: 324 : ** ** * **** * * *: 1fuu_B_1 89:-------------------------------------------------------------APQALULAPTRELALQIQKVVUALAFHUD---IKVHACI: 124 SecStr :-------------------------------------------------------------S EEEE SSHHHHHHHHHHHHHHTTTS --- EEEE : ExpBur :-------------------------------------------------------------ebbbbbbbbeeeebeebbebbeebbeeee---bebbbbb: Contact : b queryA 325:GGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMH: 424 :** * ******** * ***** ** * * * * ** *** ** * : 1fuu_B_1 125:GGTSFVEDAEGLRDA-QIVVGTPGRVFDNIQRRRFRTDKIKUFILDEADEULSSGFKEQIYQIFTLLPPTT------QVVLLSATUPN-DVLEVTTKFUR: 216 SecStr :SS HHHHHHHHHH -SEEEE HHHHHHHHHTTSS TT EEEETTHHHHHHTT HHHHHHHHHTS TT ------EEEEE SS H-HHHHHHHHH S: ExpBur :eeeeeeebeebbeeb-bbbbbbbeebeebbeeebbebeebebbbbbbbbebbeeebeeebbebbeebeeeb------bbbbbbeeeee-ebeebbeebbe: Contact :bbbb queryA 425:FPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ: 524 : * * * * * * * * ** *** * * : 1fuu_B_1 217:NPVRILVKKDELTLEGIKQFYVNVEEE-------------------------------EYKYECLTDLYDSISV--------TQAVIFCNTRRKVEELTT: 277 SecStr :S EEEEE SSSEEEEEEEESG-------------------------------GGHHHHHHHHTTSS S-------- EEEEESSHHHHHHHHH: ExpBur :ebbebeeeeeeeebeebebbbeebeee-------------------------------eebbeebbebbeebee--------bebbbbbeeeebbeebbe: queryA 525:YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATE: 622 : * * ** * * * ** ** ***** * *** ** * ** ***** * * ** * *: 1fuu_B_1 278:KL---------RNDKFTVSAIYSDLPQQERDTIUKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGXXXXKGVAINFVTNE: 366 SecStr :HH---------HTTT EEEE TTS HHHHHHHHHHHTTSS EEEEEGGGTTT S SEEEESS SSTTHHHHHS ---- EEEEEEESS: ExpBur :eb---------eeeeeebbbbbeebeeeeeeebeeebeeeebebbbbbbebbeebeebebbbbbbbbbbeeeeebbebbbeee----ebbbbbbbbee: |