[pdbjlvh2]Protein Model on 8cx9_A_1_G

Protein Model on 8cx9_A_1_G_1 (TEMPLATE: 8cx9 )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(R1A_SARS2)	A 1 (B)	polymer(polypeptide(L)) [314 aa]	Papain-like protease nsp3 :R1A_SARS2
2	b		G 1 (F)	polymer(polypeptide(L)) [75 aa]	Ubiquitin variant UbV.CV2.1 :RL40_HUMAN	1576N 1577I 1578N 1579L 1580H 1581T 1626T 1629V 1633E 1697D 1700Y 1701R (identity: 100.0 %/100.0 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:8cx9_A_1 identity=100.0%

queryA      1565:VRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGL:1664
                :****************************************************************************************************:
8cx9_A_1       7:VRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGL: 106
SecStr          :  EEEEEEESSSSS EEEEEESSS HHHHTSSEEETTEE TTS   GGGTT EEEE   SHHHHHHHHHHH    TTSHHHHHHHHHHHTTS   EETTE:    
ExpBur          :eeebebebbbbeeeeeeeebeeeeebeeebeebbeebeebeeebbeeebeebebbbbbeeeebeebbeebbebeeeebbbbbbebbeebeebebeebeeb:    
Contact         :           bbbbbb                                            b  b   b                               

queryA      1665:TSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKG:1764
                :****************************************************************************************************:
8cx9_A_1     107:TSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKG: 206
SecStr          :E     SS HHHHHHHHHHTTS   BSSHHHHHHHHHHTTT  HHHHHHHHHHTT  TT    HHHHHHHHHHTB  SS EEEEEEEETTTEEEEEEEES:    
ExpBur          :bbbeebeebbbbbbbbbbbebbebebebebbeebbeebeeeebbebbbbbbbbbeeeeeeeebbeebbeebbeebebeebebbbbbebeeeeeeeeeeeb:    
Contact         :                                b  bb                                                               

queryA      1765:VEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPIT:1864
                :****************************************************************************************************:
8cx9_A_1     207:VEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPIT: 306
SecStr          :GGGTEEES S HHHHHH EEEE SSSSEEEEEEEEEESSEEEEEEEEEEEEE TTS SEEEEE SBTTB  EEEEEESSSEEEE SS EEE S EEEEEE:    
ExpBur          :bebbbbeebbbbeebbebbeeebeeeeebeebbbbbebebbbbbbeeeeeebbeeebbbbbbeeeeeeeeebebbbbeebbbbbebeeeeeeeebebbbb:    

queryA      1865:DVFYKENSYTTTIK:1878
                :**************:
8cx9_A_1     307:DVFYKENSYTTTIK: 320
SecStr          :EEEEE S EE    :    
ExpBur          :bbbbebeeeebeee:

Protein Model on 8cx9_A_1_G_1 (TEMPLATE: 8cx9 )

Input Residue Numbers for Focused Sites