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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(R1A_SARS2) | A 1 (A) | polymer(polypeptide(L)) [317 aa] | Papain-like protease nsp3 :R1A_SARS2 | |
2 | b | E 1 (A) | non-polymer(NA) | SODIUM ION | 1672N 1674C(S) 1675Y (identity: 66.7 %/99.1 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7ybg_A_1 identity=99.1% |
queryA 1561:SLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQ:1660 :* *************************************************************************************************: 7ybg_A_1 1:SHMEVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQ: 100 SecStr : EEEEEEESSSSS EEEEEETTS HHHHHSSEEETTEE TT GGGTT EEEE SHHHHHHHHHHHS TTHHHHHHHHHHHHTTS E: ExpBur :eeeeeeebebbbbbbeeeeeeeebebeebbeeeeeebbeebeebbeeebeeebeeeebbbbbeeeebeebbeebbebeeeebbbebbebbeebeebebee: queryA 1661:VNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQT:1760 :************* **************************************************************************************: 7ybg_A_1 101:VNGLTSIKWADNNSYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQT: 200 SecStr :ETTEE TT HHHHHHHHHHTTS BSSHHHHHHHHHHHHT HHHHHHHHHHHT TT HHHHHHHHHHTB TT EEEEEEEETTTEEEEE: ExpBur :beebbbbeeeeebbbbbbbbbbbbbbebebebebbeebbeebeebebbbbbbbbbbbbeeebeeeeebeebbbebbeebebeebebbbbebbeeeeeeee: Contact : b bb queryA 1761:TLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYK:1860 :****************************************************************************************************: 7ybg_A_1 201:TLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYK: 300 SecStr :EEETHHHHEEES S HHHHHH EEEE TTSSEEEEEEEEEESSEEEEEEEEEEEEE TTS SEEEEEEEETTEEEEEEEEESSSEEEEETTEEEEESSEE: ExpBur :eeebbebbbbeebbebeebbebbebebeeeeebbebbbbbebebbbbbbeeeeeebeeeebebbbbbeeeeeeeebebbbbeebbbbbbbeeeeeeeebe: queryA 1861:GPITDVFYKENSYTTTI:1877 :*****************: 7ybg_A_1 301:GPITDVFYKENSYTTTI: 317 SecStr :EEEEEEEEE SEEE : ExpBur :bbbbbbbbebeeeebee: |