[pdbjlvh2]Protein Model on 7ybg_A_1_B

Protein Model on 7ybg_A_1_B_1 (TEMPLATE: 7ybg )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(R1A_SARS2)	A 1 (A)	polymer(polypeptide(L)) [317 aa]	Papain-like protease nsp3 :R1A_SARS2
2	b		B 1 (A)	non-polymer(DTT)	2,3-DIHYDROXY-1,4-DITHIOBUTANE	1725L 1726G 1727D 1811P 1827Y 1831Y 1832Q 1836Y 1864T (identity: 100.0 %/99.1 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:7ybg_A_1 identity=99.1%

queryA      1561:SLREVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQ:1660
                :*  *************************************************************************************************:
7ybg_A_1       1:SHMEVRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQ: 100
SecStr          :      EEEEEEESSSSS EEEEEETTS HHHHHSSEEETTEE TT    GGGTT EEEE   SHHHHHHHHHHHS   TTHHHHHHHHHHHHTTS   E:    
ExpBur          :eeeeeeebebbbbbbeeeeeeeebebeebbeeeeeebbeebeebbeeebeeebeeeebbbbbeeeebeebbeebbebeeeebbbebbebbeebeebebee:    

queryA      1661:VNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQT:1760
                :************* **************************************************************************************:
7ybg_A_1     101:VNGLTSIKWADNNSYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQT: 200
SecStr          :ETTEE     TT HHHHHHHHHHTTS   BSSHHHHHHHHHHHHT  HHHHHHHHHHHT  TT    HHHHHHHHHHTB  TT EEEEEEEETTTEEEEE:    
ExpBur          :beebbbbeeeeebbbbbbbbbbbbbbebebebebbeebbeebeebebbbbbbbbbbbbeeebeeeeebeebbbebbeebebeebebbbbebbeeeeeeee:    
Contact         :                                                                bbb                                 

queryA      1761:TLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYK:1860
                :****************************************************************************************************:
7ybg_A_1     201:TLKGVEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYK: 300
SecStr          :EEETHHHHEEES S HHHHHH EEEE TTSSEEEEEEEEEESSEEEEEEEEEEEEE TTS SEEEEEEEETTEEEEEEEEESSSEEEEETTEEEEESSEE:    
ExpBur          :eeebbebbbbeebbebeebbebbebebeeeeebbebbbbbebebbbbbbeeeeeebeeeebebbbbbeeeeeeeebebbbbeebbbbbbbeeeeeeeebe:    
Contact         :                                                  b               b   bb   b                        

queryA      1861:GPITDVFYKENSYTTTI:1877
                :*****************:
7ybg_A_1     301:GPITDVFYKENSYTTTI: 317
SecStr          :EEEEEEEEE SEEE   :    
ExpBur          :bbbbbbbbebeeeebee:    
Contact         :   b

Protein Model on 7ybg_A_1_B_1 (TEMPLATE: 7ybg )

Input Residue Numbers for Focused Sites