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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(R1A_SARS2) | A 1 (A) | polymer(polypeptide(L)) [312 aa] | Papain-like protease :R1A_SARS2 | |
2 | b | B 1 (A) | non-polymer(VBY) | 5-(acryloylamino)-2-methyl-N-[(1R)-1-(naphthalen-1-yl)ethyl]benzamide | 1725L 1726G 1727D 1730E 1810P 1811P 1827Y 1831Y 1832Q 1836Y 1864T (identity: 100.0 %/99.7 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7jiv_A_1 identity=99.7% |
queryA 1567:TIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTS:1666 :****************************************************************************************************: 7jiv_A_1 7:TIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLTS: 106 SecStr : EEEEEESSSSS EEEEE SSS HHHHHSSEEETTEE TTS GGGTT EEEE SHHHHHHHHHHHS TTHHHHHHHHHHHHTTS EETTEE : ExpBur :ebebebbbbeeeeeeeebeeeebbbeebeebbeebeebbeeebeeebeeeebbbeeeeeebeebbeebbeeeeeebbbebbebbeebeebebeebeebbb: queryA 1667:IKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVE:1766 :******* ********************************************************************************************: 7jiv_A_1 107:IKWADNNSYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVE: 206 SecStr : S TTTHHHHHHHHHHTTS BSSHHHHHHHHHHHTT HHHHHHHHHHHT TT HHHHHHHHHHTB TT EEEEEEEETTTEEEEEEEETHH: ExpBur :beeeeebbbbbbbbbbbbbbebebebebbbebbeebeeeebbebbbbbbbbbebeeeeebebeebbeebbeebebeebebbbbeebeeeeeeeeeeebbe: Contact : bbb b queryA 1767:AVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITDV:1866 :****************************************************************************************************: 7jiv_A_1 207:AVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITDV: 306 SecStr :HHEEES S HHHHHH EEEE TTSSEEEEEEEEEESSEEEEEEEEEEEEEETTS SEEEEEESSTTT EEEEEEESSSEEEEETTEEEEESEEEEEEEEE: ExpBur :bbbbeebbebeebbebbebebeeeeebeebbbebebebbbbbbeeeeeebeeeebbbbbbbeeeeeeeebebbbbeebbbbbebeeeeeeeebebebbbb: Contact : bb b bb b b queryA 1867:FYKENSYTTTIK:1878 :************: 7jiv_A_1 307:FYKENSYTTTIK: 318 SecStr :EEE SEEE S : ExpBur :bbebeeeebeee: |