[pdbjlvh2]Protein Model on 8gai_C_1_D

Protein Model on 8gai_C_1_D_1 (TEMPLATE: 8gai )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:2]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(IMA1_HUMAN)	C 1 (C)	polymer(polypeptide(L)) [434 aa]	Importin subunit alpha :H0VVB1_CAVPO
2	b		D 1 (D)	polymer(polypeptide(L)) [27 aa]	Bimax2	101R 104L 105S 106R 107E 110P 138F 142W 146N 148A 149S 150G 151T(S) 155T 181Q 184W 188N 191G 192D 228N 231W 235N 238R 240K 241N 273W 277Y 280D 281G 283N 286I 315R 319N 321V 322T 323G 324T 325D 328T 354E 357W 360S 361N 364A 365G 366R 396E 399W 405T 406S 408G 413I 442D 446N 449Q 453K (identity: 98.2 %/94.7 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:8gai_C_1 identity=94.7%

queryA        76:WSVDDIVKGINSSNVENQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGRTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPH: 175
                :* ********** * *********************** ************************************ *************** ********:
8gai_C_1      18:WTVDDIVKGINSNNLENQLQATQAARKLLSREKQPPIDHIIRAGLIPKFVSFLGRTDCSPIQFESAWALTNIASGSSEQTKAVVDGGAIPALISLLASPH: 117
SecStr          :  HHHHHHHHTSS HHHHHHHHHHHHHHHHHSSS  HHHHHHTT HHHHHHHTT TT HHHHHHHHHHHHHHTTS HHHHHHHHHTTHHHHHHHHTT SS:    
ExpBur          :eebeebeebbebeeeeebbebbebbbeebeeeeeeebeebeeeebbeebbebbeeeebeebbebbbebbbbbbeeeeebbebbbeeebbebbbebbebee:    
Contact         :                         b  bbbb  b                           b   b   b bbbb   b                    

queryA       176:AHISEQAVWALGNIAGDGSVFRDLVIKYGAVDPLLALLAVPDMSSLACGYLRNLTWTLSNLCRNKNPAPPIDAVEQILPTLVRLLHHDDPEVLADTCWAI: 275
                :****************************** **************** ********************** **************** * **********:
8gai_C_1     118:AHISEQAVWALGNIAGDGSVFRDLVIKYGAIDPLLALLAVPDMSSLAGGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDLEVLADTCWAI: 217
SecStr          :HHHHHHHHHHHHHHHHT HHHHHHHHHTT HHHHHHHTSS   SHHHHHHHHHHHHHHHHHT   SS   HHHHHHHHHHHHHHTT   HHHHHHHHHHH:    
ExpBur          :eebbbbbbebbbbbbeebbebbeebbeeebbeebbeebeeeeeeeebbebbebbbebbbbbbeeeeeebeeebbeebbebbeebbeeebeebbbbbbebb:    
Contact         :     b  b   b  bb                                   b  b   b  b bb                               b  

queryA       276:SYLTDGPNERIGMVVKTGVVPQLVKLLGASELPIVTPALRAIGNIVTGTDEQTQVVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVN: 375
                :*********** ********* ******  ** * ******************* **************  *****************************:
8gai_C_1     218:SYLTDGPNERIEMVVKTGVVPHLVKLLGSNELSIMTPALRAIGNIVTGTDEQTQIVIDAGALAVFPSLLVHPKTNIQKEATWTMSNITAGRQDQIQQVVN: 317
SecStr          :HHHHSS HHHHHHHHHTT HHHHHHHHT S HHHHHHHHHHHHHHHTS HHHHHHHHHTTGGGGHHHHHT SSHHHHHHHHHHHHHHHTS HHHHHHHHH:    
ExpBur          :bbbbeeeeebbebbbeeebbeebbebbebeeeebbebbbebbbbbbebeeebbbebbeeebbeebeebbebeeeebbebbbebbbebbebeeebbeebbe:    
Contact         : b  bb b  b                            b   b bbbbb  b                         b  b  bb  bbb         

queryA       376:HGLVPFLVSVLSKADFKTQKEAVWAVTNYTSGGTVEQIVYLVHCGIIEPLMNLLTAKDTKIILVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEA: 475
                :***** **********************************************************************************************:
8gai_C_1     318:HGLVPILVSVLSKADFKTQKEAVWAVTNYTSGGTVEQIVYLVHCGIIEPLMNLLTAKDTKIILVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEA: 417
SecStr          :TTHHHHHHHHHHHS HHHHHHHHHHHHHHHHHS HHHHHHHHHTT HHHHHHGGG S HHHHHHHHHHHHHHHHHHHHHT HHHHHHHHHHTTHHHHHHH:    
ExpBur          :eebbeebbebbeebeeebbebbbebbbebbeebeeebbeebbeeebbebbbebbebeeeebbebbbebbeebbebbeeeeeeeebbeebeeeebbebbee:    
Contact         :                    b  b     bb b    b                            b   b  b   b                      

queryA       476:LQNHENESVYKASLSLIEKYFSVEEEEDQNVVPE: 509
                :************** ************** ****:
8gai_C_1     418:LQNHENESVYKASLNLIEKYFSVEEEEDQTVVPE: 451
SecStr          :HTT SSHHHHHHHHHHHHHHS  TTSSS      :    
ExpBur          :beeeeeeebeeebeebbeebbbeeeeeeeeeeee:

Protein Model on 8gai_C_1_D_1 (TEMPLATE: 8gai )

Input Residue Numbers for Focused Sites