[pdbjlvh2]Protein Model on 7sqc_MD_1_HD

Protein Model on 7sqc_MD_1_HD_1 (TEMPLATE: 7sqc )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(IMA1_HUMAN)	MD 1 (D2)	polymer(polypeptide(L)) [468 aa]	PF16 :A0A2K3DEG1_CHLRE
2	b		HD 1 (C2)	polymer(polypeptide(L)) [1498 aa]	CPC1 :Q6J4H1_CHLRE	249V(G) 280D(K) 281G(H) 287G(Q) 288M(L) 291K(G) 292T(N) 319N(Y) 350N(H) 351I(L) 354E(A) (identity: 0.0 %/25.2 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:7sqc_MD_1 identity=25.2%

queryA        75:NWSVDDIVKGINSSNVENQL------------QATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGRTDCSPIQFESAWALTNIASGTSEQTKAVVDGG: 162
                :* * **            **            **         *         *  *     *  *   *       *** *  **    *    *** *:
7sqc_MD_1     70:NYS-DDLAEAVVQNEILPQLVYSLSEQNRFYKQAAAFCLRAVARHSPELAQSVIDSGALDSLVTCLEEFD-PGVKEASAWTLGYIAGHNAELAQQVVDAG: 167
SecStr          :TT -HHHHHHHHHTTHHHHHHHHHHSS HHHHHHHHHHHHHHHTS HHHHHHHHHTTHHHHHHHHTTSS -HHHHHHHHHHHHHHHTS HHHHHHHHHHT:    
ExpBur          :eee-eebbeebbeeebbeebbebbeeeeeebbebbbbbbbbbbeeeeebbebbbeeebbebbbebbeeee-eebbebbbebbbebbbeeeebbeebbeee:    

queryA       163:AIPAFISLLASPHAHISEQAVWALGNIAGDGSVFRDLVIKYGAVDPLLALLAVPDMSSLACGYLRNLTWTLSNLCRNKNPAPPIDAVEQILPTLVRLLHH: 262
                :* *        *       *  **  *          *   ***  *  *    *         *     **                 * *     *  :
7sqc_MD_1    168:AVPLLVLCVQEPELSLKRIAASALSDISKHTPELAQAVVDAGAVAYLAPLVINQDAK-----LKRQVCCALSQIAKHSVDLAEVVVGAEIFPKILTCLKF: 262
SecStr          :HHHHHHHHHHSS HHHHHHHHHHHHHHHTS HHHHHHHHHSS HHHHSGGGSS  HH-----HHHHHHHHHHHHHTS HHHHHHHHHTT HHHHHHHTTS:    
ExpBur          :bbebbbebbebeeeebbebbbbbbbbbbeeeeebbeebbeeebbeebbebbeeeeee-----bbeebbbbbbebbeeeeebbeebeebebbeebeebbee:    
Contact         :                                                                                      b             

queryA       263:DDPEVLADTCWAISYLTDGPNERIGMVVKTGVVPQLVKLLGASELPIVTPALRAIGNIVTGTDEQTQVVIDAGALAVFPSLLTN-PKTNIQKEATWTMSN: 361
                : *  *                *    **  * *  **     *      *   * * *          **   **    * *   *         **   :
7sqc_MD_1    263:PDEFVKKHSATVVREVAKHTPELAQLVVGNGGVGALVDYISDSAGNNRLPGIMALGYIAAFSETLALSVIAEKALPPLVSALNEEPEDHLKSATAWTLGQ: 362
SecStr          :S HHHHHHHHHHHHHHHHS HHHHHHHHHHTHHHHHHHHHHHS GGGSHHHHHHHHHHHHH HHHHHHHHTTS HHHHHHHHHT   HHHHHHHHHHHHH:    
ExpBur          :ebeebbebbbbbbbbbbebeeebbeebbeeebbebbbebbeebeeebbebbbebbbebbbeeeebbeebeeeebbebbbebbeeeeeeebbebbbebbbe:    
Contact         :                 bb     bb  bb                          b                               bb  b       

queryA       362:ITAGRQDQIQQVVNHGLVPFLVSVLSKA----DFKTQ: 394
                :*     *    *   *    ***  *      * ** :
7sqc_MD_1    363:IGRXXPDHAKAVADTGCLATLVSLESDXXXSDDLKTK: 399
SecStr          :HT -- HHHHHHHHHT HHHHHHHHH --- HHHHHH:    
ExpBur          :bbe--eebbeebbeeebbebbbeebee---eeeebee:

Protein Model on 7sqc_MD_1_HD_1 (TEMPLATE: 7sqc )

Input Residue Numbers for Focused Sites