[pdbjlvh2]Protein Model on 8d82_C_1_A

Protein Model on 8d82_C_1_A_1 (TEMPLATE: 8d82 )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(IL6RA_HUMAN)	C 1 (A)	polymer(polypeptide(L)) [589 aa]	Interleukin-6 receptor subunit beta :IL6RB_HUMAN
2	b		A 1 (C)	polymer(polypeptide(L)) [296 aa]	Soluble interleukin-6 receptor subunit alpha :IL6RA_HUMAN	229R(E) 230N(L) 233W(I) 235S(K) 250R(I) 271K(E) 272D 274Q(R) 276H(S) 278V(T) 280H(Q) (identity: 9.1 %/28.6 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:8d82_C_1 identity=28.6%

queryA       106:VHLLVDVPPEEPQ-LSCFRKSPLSNVVCEW-GPRST---PSLTTKAVLLVRKFQNSPAEDFQEPCQYSQESQKFSCQLAVPEGDSSFYIVSMCV----AS: 196
                :       *** *  ***          *** * * *      * *      **    *                **        *  * *   *      :
8d82_C_1      96:ITIISGLPPEKPKNLSCIVNEG-KKMRCEWDGGRETHLETNFTLKSEWATHKFADCKA----------KRDTPTSCTVDY----STVYFVNIEVWVEAEN: 180
SecStr          :EEEE        EEEEEEEESS-S EEEEEE  S  SS  EEEEEEE SS     EE ---------- SS SS  B SS----    SS EEEEEEEE :    
ExpBur          :bebebbeebeebeebebbbebe-eebebebeeeeebebeeebbbebeeeeeeeeebeb----------eeeeeeebebeb----eeeeebebebbbbbeb:    

queryA       197:SVGSKFSKTQTFQGCGILQPDPPANITVTAVARNPRWLSVTWQDPHSWNSSFYRLRFELRYRAERSKTFTTWMVKDL---QHHCVIHDAWSGLRHVVQLR: 293
                :  *   *    *       * ** *  *         *  **  *     *   *     **     *       *           *       *   *:
8d82_C_1     181:ALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSI--KSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIR: 278
SecStr          :SS EEE   EEE TTTSEE    EEEEEE  SSSSS EEEEEE  GG--GGTS EEE  EEE SS  S EE  GGGG S  SEEEE S  SS EEEEE  :    
ExpBur          :eeeeeebeeeebbbbeebebeebeebeeeebeeeeebbebebebbeb--eeebebebbbbebeeeeeeeeebeeeebeeeeeebebeebeeebebbbbbe:    
Contact         :                                bb  b b              b                    bb    b b b b             

queryA       294:AQEEFGQGEWSEWSPEAMGTPWTE--SRSP: 321
                :   * * * ** ** ** *       *  *:
8d82_C_1     279:CMKEDGKGYWSDWSEEASGITYEDRPSKAP: 308
SecStr          :EEETTSSS        EEEE       S  :    
ExpBur          :bbbeeeebeebeebeebebebebeebeeeb:

Protein Model on 8d82_C_1_A_1 (TEMPLATE: 8d82 )

Input Residue Numbers for Focused Sites