[pdbjlvh2]Protein Model on 7vpp_A_1_F

Protein Model on 7vpp_A_1_F_1 (TEMPLATE: 7vpp )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(AMPN_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [904 aa]	Aminopeptidase :K7GMF9_PIG
2	b		F 1 (F)	branched(oligosaccharide)	2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	228A 507F 510Q 511N (identity: 100.0 %/79.5 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:7vpp_A_1 identity=79.5%

queryA        62:ATTLDQSKAWNRYRLPNTLKPDSYRVTLRPYLTPNDRGLYVFKGSSTVRFTCKEATDVIIIHSKKLNYTLSQGHRVVLRGVGGSQPPDIDKTELVEPTEY: 161
                :* ****** ******* ** **** **********  *** *** * *** * * **************  *** ******* ** * ** ***** ***:
7vpp_A_1       1:AITLDQSKPWNRYRLPTTLLPDSYNVTLRPYLTPNADGLYIFKGKSIVRFICQEPTDVIIIHSKKLNYT-TQGHMVVLRGVGDSQVPEIDRTELVELTEY:  99
SecStr          :     TTSGGGSSS  SSEEEEEEEEEEEE  S  TTS  EEEEEEEEEEEE S  SEEEEE  S EE - SSSS EEEESTT     EEEEEEETTTTE:    
ExpBur          :eeeeeeeeebbeeebeebbebebbebebebebeeeeeeebbbebebebebebeeebebbbbbbeebebe-beeeebebeeeeebeebebeebeebeebbb:    

queryA       162:LVVHLKGSLVKDSQYEMDSEFEGELADDLAGFYRSEYMEGNVRKVVATTQMQAADARKSFPCFDEPAMKAEFNITLIHPKDLTALSNMLPKGPSTPLPED: 261
                :*********     *** *** ******************** ** ******  **************** ********  ******* *** **** **:
7vpp_A_1     100:LVVHLKGSLQPGHMYEMESEFQGELADDLAGFYRSEYMEGNVKKVLATTQMQSTDARKSFPCFDEPAMKATFNITLIHPNNLTALSNMPPKGSSTPLAED: 199
SecStr          :EEEEESS   TT EEEEEEEEEEE BSSSSEEEEEEEEETTEEEEEEEEE TTTTGGGTS B  STTS BEEEEEEEEETTSEEEESS BSS  EE SS :    
ExpBur          :bbbbbeeebeeeeebebbbbbebebbeebbbbbbbebebeeeeeebbbbbbbbbbbbbbbbbbbbbebbbebebbbbbeeebebbbbbeeeeeeeebeee:    
Contact         :                                                                  b                                 

queryA       262:PNWNVTEFHTTPKMSTYLLAFIVSEFDYVEKQASNGVLIRIWARPSAIAAGHGDYALNVTGPILNFFAGHYDTPYPLPKSDQIGLPDFNAGAMENWGLVT: 361
                :*** **** *** ******* *****  *   * *********** *** *** ************** ** *********** ****************:
7vpp_A_1     200:PNWSVTEFETTPVMSTYLLAYIVSEFQSVNETAQNGVLIRIWARPNAIAEGHGMYALNVTGPILNFFANHYNTPYPLPKSDQIALPDFNAGAMENWGLVT: 299
SecStr          :TTEEEEEB    SB GGG  EEEE  EEEEEE TTS EEEEEE HHHHHTTTTHHHHHHHHHHHHHHHHHTT    SSEEEEEEESS SSSEE  TTEEE:    
ExpBur          :eebbbbebeebbebbbbbbbbbbbebeebeeebeeebebbbbbbbebbeeebbebbbebbbebbbebbebbebebebebbbbbbbbbbeeebbbbbbbbb:    

queryA       362:YRENSLLFDPLSSSSSNKERVVTVIAHELAHQWFGNLVTIEWWNDLWLNEGFASYVEYLGADYAEPTWNLKDLMVLNDVYRVMAVDALASSHPLSTPASE: 461
                :**** ***** *** ************************  ********************* ********** *  ***************** *** *:
7vpp_A_1     300:YRENALLFDPQSSSISNKERVVTVIAHELAHQWFGNLVTLAWWNDLWLNEGFASYVEYLGADHAEPTWNLKDLIVPGDVYRVMAVDALASSHPLTTPAEE: 399
SecStr          :EEHHHH   TTTS HHHHHHHHHHHHHHHHTTTBTTTEEESSGGGTHHHHHHHHHHHHHHHHHHSGGG GGGGHHHHTHHHHHHHHTSTT   SS  GGG:    
ExpBur          :bbbbbbbbbeeebbbebebebbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbeeebeebebeebbbbebbbebbebbbbbbbbbbbbeeee:    

queryA       462:INTPAQISELFDAISYSKGASVLRMLSSFLSEDVFKQGLASYLHTFAYQNTIYLNLWDHLQEAVNNR-SIQLPTTVRDIMNRWTLQMGFPVITVDTSTGT: 560
                : ******** ** ********* **** ** ** ** ******* ****** ** ** *** **    ** ** *** ** *************** ** :
7vpp_A_1     400:VNTPAQISEMFDSISYSKGASVIRMLSNFLTEDLFKEGLASYLHAFAYQNTTYLDLWEHLQKAVDAQTSIRLPDTVRAIMDRWTLQMGFPVITVDTKTGN: 499
SecStr          :  SHHHHHHTSSHHHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHTTTEEE HHHHHHHHHHHHTT SS   SS HHHHHHHHHSS S EEEEEETTTTE:    
ExpBur          :beeeeebebbeebbbebbbbbbbbbbbebbeeebbeebbbebbeebeeeebebeebbebbbebbeeeeeeeeeeebebbbbbbbebbbbbbbebebeebe:    
Contact         :                                             b  bb                                                  

queryA       561:LSQEHFLLDPDSNVTRPSEFNYVWIVPITSIRDGRQQQDYWLIDV-RAQNDLFSTSGNEWVLLNLNVTGYYRVNYDEENWRKIQTQLQRDHSAIPVINRA: 659
                : ** *****  ***** * * * ***** **  *  *  *** **  ****** *    ***** *****  ***** *** ** ***   * *******:
7vpp_A_1     500:ISQKHFLLDSESNVTRSSAFDYLWIVPISSIKNGVMQDHYWLRDVSQAQNDLFKTASDDWVLLNINVTGYFQVNYDEDNWRMIQHQLQTNLSVIPVINRA: 599
SecStr          :EEEEE  SSS     S  TTTT   EEE EEETTEE   EEE S SEEE GGG   TT  EEESGGG SSSEEEE HHHHHHHHHHHHHTSTTS HHHHH:    
ExpBur          :bebebbbbbeeeeeeeebebebbbbbbbbbbeeeeebeebbbeeeeeeeeebbebeeeebbbbbbebbbbbbbbbbeebbebbbeebeeeeeebeebbbb:    

queryA       660:QIINDAFNLASAHKVPVTLALNNTLFLIEERQYMPWEAALSSLSYFKLMFDRSEVYGPMKNYLKKQVTPLFIHFRNNTNNWREIPENLMDQYSEVNAIST: 759
                :* * * **** ** ******* *****  *  **** ********* ************* ** *** *** **   * ** * ********** *****:
7vpp_A_1     600:QVIYDSFNLATAHMVPVTLALDNTLFLNGEKEYMPWQAALSSLSYFSLMFDRSEVYGPMKKYLRKQVEPLFQHFETLTKNWTERPENLMDQYSEINAIST: 699
SecStr          :HHHHHHHHHHHTTTS HHHHHGGGGGGGG   HHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHTTTTTS  SSHHHHHHHHHHHHH:    
ExpBur          :bbbbbbbebbbbeebebebbbebbbbbeebeebbbbebbbebbebbebbbbeeebeeebeebbeebbeebbeebeeebeebeeebeebbebbbbbbbbeb:    

queryA       760:ACSNGVPECEEMVSGLFKQWMENPNNNPIHPNLRSTVYCNAIAQGGEEEWDFAWEQFRNATLVNEADKLRAALACSKELWILNRYLSYTLNPDLIRKQDA: 859
                :***** * **     ** ***  * *********** *********   ***** *   * ********* ***** * * ***** *************:
7vpp_A_1     700:ACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLRSTIYCNAIAQGGQDQWDFAWGQLQQAQLVNEADKLRSALACSNEVWLLNRYLGYTLNPDLIRKQDA: 799
SecStr          :HHHTT HHHHHHHHHHHHHHHH TTS  S GGGHHHHHHHHHHHS HHHHHHHHHHHHT SSHHHHHHHHHHGGG   HHHHHHHHHHTT TTTS GGGH:    
ExpBur          :bbebebeebeebbeebbeebeeeeeeeebebbbbebbbebbbeeeeeeebebbbeebeeeebebbbbbbbebbbbbeeeebbeebbeebeeeeebeebbb:    

queryA       860:TSTIISITNNVIGQGLVWDFVQSNWKKLFNDYGGGSFSFSNLIQAVTRRFSTEYELQQLEQFKKDNEETGFGSGTRALEQALEKTKANIKWVKENKEVVL: 959
                :**** **  ***** * ************ ***    ******* ****** * ********** *   *******************************:
7vpp_A_1     800:TSTINSIASNVIGQPLAWDFVQSNWKKLFQDYGXXXXSFSNLIQGVTRRFSSEFELQQLEQFKKNNMDVGFGSGTRALEQALEKTKANIKWVKENKEVVL: 899
SecStr          :HHHHHHHHHSTTHHHHHHHHHHTTHHHHTTS  ---- HHHHHHHHHTT  SHHHHHHHHHHHHHTTTT  GGGHHHHHHHHHHHHHHHHHHHHHHHHHH:    
ExpBur          :bebbbebbebeebbebbbebbeeebeebeeebe----ebeebbebbbebbbeeebbeebeebeeebeeeebebbeebbebbbbebebbbebbeebeeebb:    

queryA       960:QWFTE: 964
                : ** *:
7vpp_A_1     900:NWFIE: 904
SecStr          :HHHHS:    
ExpBur          :ebbee:

Protein Model on 7vpp_A_1_F_1 (TEMPLATE: 7vpp )

Input Residue Numbers for Focused Sites