[pdbjlvh2]Protein Model on 6oiu_C_1_R

Protein Model on 6oiu_C_1_R_1 (TEMPLATE: 6oiu )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:3]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(AMPN_HUMAN)	C 1 (C)	polymer(polypeptide(L)) [900 aa]	Aminopeptidase N :S8G5K8_TOXGM
2	b		R 1 (C)	non-polymer(GOL)	GLYCEROL	472F(Y) 477Y (identity: 50.0 %/28.5 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:6oiu_C_1 identity=28.5%

queryA       190:LAGFYRSEYMEGNVRKVVATTQMQAADARKSFPCFDEPAMKAEFNITLIHPKDLTALSNMLPKG---PSTPLPEDPNWNVTEFHTTPKMSTYLLAFIVSE: 286
                :* * * *             **  *   *      * *     *   *    *  *    *  *    *             *        ** *     :
6oiu_C_1     124:LMGLYKS--------GALLVTQCEAEGFRRITYFLDRPDVMSLFKVRL--AADEKACPVLLSNGNMVESGKVEGEKGRHFAVFEDPFQKPCYLFALVAGD: 213
SecStr          :  EEEEE--------TTEEEEE TTTTGGGTS B  STT  EEEEEEE--EEETTT  EEEESSEEEEEEE SSSSSEEEEEEEEEEEE GGG  EEEE :    
ExpBur          :bbbbbeb--------eebbbbbbbbebbbbbbbbbbebbbbbebebeb--bbeeeebeebbbbbeeeeeeeeeeeeebbbbbbebeeebbbbbbbbbbbe:    

queryA       287:FDYVEKQ----ASNGVLIRIWARPSAIAAGHGDYALNVTGPILNFFAGHYDTPYPLPKSDQIGLPDFNAGAMENWGLVTYRENSLLFDPLSSSSSNKERV: 382
                :               *   *   *          **                 * *         *** ***** **       ** **         * :
6oiu_C_1     214:LKSISQSFTTMSGRNVKVSIFSEPED--SSKLTWALESVLKSMKWDEERFGREYDLDVFNVVCAKDFNMGAMENKGLNIFNAALLLADPSTTTDAEYQRI: 311
SecStr          : EEEEEEEE TTS EEEEEEEE GGG--TTS HHHHHHHHHHHHHHHHHH     SSEEEEEEESS SSSEE  TTEEEEEGGGT   TTT  HHHHHHH:    
ExpBur          :beeeeeebebeeeeebebbbbbbeeb--eebbebbbebbbebbebbbeebebebbbeebbbbbbbbbbbebbbbbbbbbbbbbbbbbeeebbbbebbbeb:    

queryA       383:VTVIAHELAHQWFGNLVTIEWWNDLWLNEGFASYVEYL-GADYAEPTWN-LKDLMVLNDVYRVMAVDALASSHPLSTPASEINTPAQISELFDAISYSKG: 480
                :  *  **  *** ** **   *  * * **       *  **          *   *    *  * *     **   *   *           *  * **:
6oiu_C_1     312:LNVVGHEYFHQWTGNRVTCRDWFQLTLKEGLTVFRDQLFTADMCSAAVKRIEDVVFLRS--RQFAEDSGPMAHPIR-PETYI----AMDNFYTATVYDKG: 404
SecStr          :HHHHHHHHHTTTBTTTEEESSGGGHHHHHHHHHHHHHHHHHHHS HHHHHHHHHHHHHH--HHHHHHTSTT   SS- SEES---- GGGG SHHHHHHH:    
ExpBur          :bbbbbbbbbbbbbbbbbbbebbbbbbbbbbbbbbbbbbbbbeeebeebbbbebbeebbb--ebbbbbebebbbbbb-beebe----bbbbbbbbbbeebb:    
Contact         :                                                                                           b    b   

queryA       481:ASVLRMLSSFLSEDVFKQGLASYLHTFAYQNTIYLNLWDHLQEAV---NNRSIQLPTTVRDI--MNRWTLQMGFPVITVDTSTGTLSQEHFLL: 568
                :* * **    * *  *  *   *                *   **     *        **     ** ** * *  **           * *:
6oiu_C_1     405:AEVIRMYHTLLGEAGFRKGMDLYFKR-------------HDGKAVTCDDFRAAMADANGRDLGQFERWYLQAGTPEVTVSEAVFQPDRKKFKL: 484
SecStr          :HHHHHHHHHHHHHHHHHHHHHHHHHH-------------HTTEEE HHHHHHHHHHHHT   TGGGHHHH  S  EEEEEEEEEETTTTEEEE:    
ExpBur          :bbbbbbbbbbbeeebbeebbebbbee-------------beeeebbbeebbebbbeeeeeebeebeebbebbbbbebebeeeebeeeeeebeb:

Protein Model on 6oiu_C_1_R_1 (TEMPLATE: 6oiu )

Input Residue Numbers for Focused Sites