[pdbjlvh2]Protein Model on 5j5e_A

Protein Model on 5j5e_A_1 (TEMPLATE: 5j5e )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description
1	a	A(AMPN_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [409 aa]	Endoplasmic reticulum aminopeptidase 1 :ERAP1_HUMAN

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:5j5e_A_1 identity=27.3%

queryA       548:GFPVITVDTSTGT---LSQEHFLLDPDSNVTRPSEFNYVWIVPITSIRDGRQQQDYWLIDVRAQNDLFSTSGNEWVLLNLNVTGYYRVNYDEENWRKIQT: 644
                :*** **  *  *      ***                * * ** * *          *        *      **   *    *** * *    *     :
5j5e_A_1       1:GFPLITI-TVRGRNVHMKQEHYM----XXXXXXXXXXYLWHVPLTFITSKSDMVHRFLLKTKT-DVLILPEEVEWIKFNVGMNGYYIVHYEDDGWDSLTG:  94
SecStr          : EEEEEE-EEETTEEEEEEEEE --------------    EEEEEEESS  S EEEEE SSE-EEEE SS  S EEEEESSSS  EE   HHHHHHHHH:    
ExpBur          :ebbbbbb-eeeeeebebebeeee--------------eeeebebebebeeeeeeeeeebeeee-eebebeeebebbbbebeeeeebbbbbeeeebeebbe:    

queryA       645:QLQRDHSAIPVINRAQIINDAFNLASAHKVPVTLALNNTLFLIEERQYMPWEAALSSL-SYFKLM--FDRSEVYGPMKNYLKKQVTPLFIHFRNNTNNWR: 741
                : *   * *     **  ** ** * *  *     **   * *  *   **    *  *    ***   *  **    *  *      *          * :
5j5e_A_1      95:LLKGTHTAVSSNDRASLINNAFQLVSIGKLSIEKALDLSLYLKHETEIMPVFQGLNELIPMYKLMEKRDMNEVETQFKAFLIRLLRDLI-----DKQTWT: 189
SecStr          :HHHH GGGS HHHHHHHHHHHHHHHHHTSS HHHHHHHTTGGGS   HHHHHHHHHHHHHHHHHHTTTT HHHHHHHHHHHHHHTHHHH-----HT  SS:    
ExpBur          :bbeeebeebeeebbbebbbbbbebbebeebebeebbebbbbbeebeebebbeebbebbeebbbbbbbeebeebbeebbebbbebbeebb-----eebebe:    

queryA       742:EIPENLMDQYSEVNAISTACSNGVPECEEMVSGLFKQWMENPNNNPIHPNLRSTVYCNAIAQGGEEEWDFAWEQFRNATLVNEADKLRAALACSKELWIL: 841
                :                  **      *     * *  * *   *          *   *      * ***            *      **        *:
5j5e_A_1     190:D-EGSVSERMLRSQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTLAVF--AVGAQSTEGWDFLYSKYQFSLSSTEKSQIEFALCRTQNKEKL: 286
SecStr          :S- S HHHHHHHHHHHHHHHHTT   - HHHHHHHHHHHHTTT S   TTSHHHHH--HHHTTSHHHHHHHHHHHHH   HHHHHHHHHHHHT S HHHH:    
ExpBur          :e-eeeeeeeebbbebbbbbbebebee-beebeeebeebeeeeeeeebeebbbbbbb--bbbbeeeebbebbbebbeebeeeeeeebbbebbbbbeeeebb:    

queryA       842:NRYLSYTLNPDLIRKQDATSTIISITNNVIGQGLVWDFVQSNWKKLFNDYGGGSFSFSNLIQAVTRRFSTEYELQQLEQFKKDNEETGFGSGTRALEQAL: 941
                :   *      * *  *        *  *  *  * * *   ** **      ** *        *  ***   *     *     *    *  *   *  :
5j5e_A_1     287:QWLLDESFKGDKIKTQEFPQILTLIGRNPVGYPLAWQFLRKNWNKLVQKFELGSSSIAHMVMGTTNQFSTRTRLEEVKGFFSSLKEN--XSQLRCVQQTI: 384
SecStr          :HHHHHHHHHTSSS GGGHHHHHHHHHTSTTTHHHHHHHHHHTHHHHHHHS SSSHHHHHHHHHHHTT  SHHHHHHHHHHHHTTTT ---   HHHHHHH:    
ExpBur          :eebbebbbeeeebeeeebbebbbebbebeebbebbbebbeeebeebbeebeeeeeebeebbebbbebbbbeeebeebeebbeebeee---eebebbebbb:    

queryA       942:EKTKANIKWVKENKEVVLQWF: 962
                :*    ** *   *      * :
5j5e_A_1     385:ETIEENIGWMDKNFDKIRVWL: 405
SecStr          :HHHHHHHHHHHHHHHHHHHHH:    
ExpBur          :eebeebbebbeebbeebeebb:

Protein Model on 5j5e_A_1 (TEMPLATE: 5j5e )

Input Residue Numbers for Focused Sites