Protein Model on 5x6m_A_1_B_1 (TEMPLATE: 5x6m )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(SMAD3_HUMAN) A 1 (B) polymer(polypeptide(L)) [122 aa] Mothers against decapentaplegic homolog 5 :SMAD5_MOUSE
2 b B 1 (C) polymer(polydeoxyribonucleotide) [22 base] DNA (5'-D(P*AP*TP*CP*AP*GP*AP*CP*TP*GP*CP*CP*GP*GP*CP*AP*GP*TP*CP*TP*AP*TP*A)-3') 74R 81K 100H 101H (identity: 100.0 %/71.1 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:5x6m_A_1 identity=71.1%
queryA        10:PIVKRLLGWKKGEQNGQEEKWCEKAVKSLVKKLKKT-GQLDELEKAITTQNVNTKCITIPRSLDGRLQVSHRKGLPHVIYCRLWRWPDLHSHHELRAMEL: 108
                :* ******** *     **** ****  *******  *   *****        ** ************************* ****** *****     :
5x6m_A_1      13:PAVKRLLGWKQGDE---EEKWAEKAVDALVKKLKKKKGAMEELEKALSSPGQPSKCVTIPRSLDGRLQVSHRKGLPHVIYCRVWRWPDLQSHHELKPLDI: 109
SecStr          : THHHHHHT    H---HHHHHHHHHHHHHHHHHTSSSHHHHHHHHHH SSS     EE   SS  EEETTEEE HHHHHHHHHT TT   GGGEEE SS:    
ExpBur          :eeeeeeeeeeeeee---eeebeeebeeebeeebeeeeebeebbeebeeeeeeeeeebebebeeeeebebeeeeebbbbbbbeeeebeebeeeebbbeeee:    
Contact         :                                                                 b      b                  bb       

queryA       109:CEFAFNMKKDEVCVNPYHYQRVETP: 133
                :*** *  *  *** ***** *** *:
5x6m_A_1     110:CEFPFGSKQKEVCINPYHYKRVESP: 134
SecStr          : SS TTS SS EE  TTSEEE    :    
ExpBur          :beebeeeeeebbbbbbebbbeeeee:    


Input Residue Numbers for Focused Sites

ex) 2,15,123