[pdbjlvh2]Protein Model on 5a9z_CB_1_GA

Protein Model on 5a9z_CB_1_GA_1 (TEMPLATE: 5a9z )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(EF1A1_HUMAN)	CB 1 (CA)	polymer(polypeptide(L)) [593 aa]	BipA
2	b		GA 1 (Ag)	polymer(polypeptide(L)) [128 aa]	Unknown peptide	161P(D) 164Q(V) 165K(D) 168E(F) 172K(V) 180K(Q) (identity: 0.0 %/30.9 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:5a9z_CB_1 identity=30.9%

queryA         9:NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ: 108
                :**  * *** ** *    *    *  * *  *  *               * *    * ******           *   * * *** **        * :
5a9z_CB_1      7:NIAIIAHVDHGKTTLVDKLLQQSGTFDSRA-ETQER--------------VMDSNDLEKERGITILAKNTAAIKWDYRINIVDTPGHADFGGEVERVMSM:  91
SecStr          :  B    SSS STTSTTT  SSSS SSS  -   S -------------- SS SS   S           SS   S   S     S SSTT THHHHTT:    
ExpBur          :bbbbbbbebebbbbbbbebeebeeeeeeee-eeebb--------------eeeeeeeebeebebbbbebeeeeeebbbbbbbbbbbebbbbbbbbbbbbb:    

queryA       109:ADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDS--TEPPYSQKRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSA: 206
                : *   * * *  *          ***     *   * *   *  ** *     *                            * *  *  **   *    :
5a9z_CB_1     92:VDSVLLVVDAFDGPMP-------QTRFVTKKAFAYGLKPIVV-INKVDRPGARPDWVVDQVFDLFVNLDATDEQLDF-----AIVYASALNGIAGLD---: 175
SecStr          : SBB EEEETTS   H-------HHHHHHHHTTSS  B  EE-EE TTSSS  SHHHHHHTTHHHHTT  SS S   -----  B   TTT   SSS---:    
ExpBur          :bbbbbbbbbbeebebe-------bbeebbeebbeeebebbbb-bbebeeeebeeeebbeebeeebeeeeeeebeebe-----bbbbbbeebbbbbee---:    
Contact         :                                                      b  bb  b   b       b                          

queryA       207:NMPWFKGWKVTRKDGNASGTTLLEAL-DCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTF: 280
                :             *     * *  *  *    *    * *              *    **   *  **   ** :
5a9z_CB_1    176:-----------HEDMAEDMTPLYQAIVDHVPAPDVDLDGPFQMQISQLDYNSYVGVIGIGRIKRGKVKPNQQVTI: 239
SecStr          :-----------SS  SSSSSSHHHHHHHHS     BSSSS BEE  S EE SSS EE   EE BS   S      :    
ExpBur          :-----------beebeebbebbbebbbeebeebebeeeebbbbbbbbbeeeeeeebbbbbbbbebebeeeeebbb:

Protein Model on 5a9z_CB_1_GA_1 (TEMPLATE: 5a9z )

Input Residue Numbers for Focused Sites