[pdbjlvh2]Protein Model on 8gce_A_1_D

Protein Model on 8gce_A_1_D_1 (TEMPLATE: 8gce )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(ITAL_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [912 aa]	Integrin alpha-IIb :ITA2B_HUMAN
2	b		D 1 (D)	branched(oligosaccharide)	beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	452H(R) (identity: 0.0 %/30.9 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:8gce_A_1 identity=30.9%

queryA       396:TPEVRAGYLGYTVTW--LPSRQKTSLLASGAPRYQH-MGRVLLFQEPQGGGHWSQVQTIHGTQIGSYFGGELCGVDVDQDGETELLLIGAPLFYGEQRG-: 491
                : **   ** ** *          *     ***      * *                   * *  ****      **  **   **  **** * * *  :
8gce_A_1     258:NPEYFDGYWGYSVAVGEFDGDLNTTEYVVGAPTWSWTLGAVEILDS-----YYQRLHRLRGEQMASYFGHSVAVTDVNGDGRHDLL-VGAPL-YMESRAD: 350
SecStr          : TTTTT  BTSS  B   SS TTTT B  EESS TTTT EEEEE T-----T  EEEEEE SSTTS TTSSEEEE TTSSSS EEE-EEETT- EE  SS:    
ExpBur          :eeebeebebbebbbebebeeeeeeebbbbbbbbbbeebbbbbbbbb-----ebeeebebebeeeebebbebbbbbebbeeebebbb-bbbbe-bebeeee:    
Contact         :                                                           b                                        

queryA       492:------GRVFIYQR----RQLGFEEVSELQGDPGYPLGRFGEAITALTDINGDGLVDVAVGAPL---EEQGAVYIFNGRHGGLSPQPSQRIEGTQVLSGI: 578
                :      ***           **      * *   *  **** **  * *   **  * ** **       * *  * *   **   ***           :
8gce_A_1     351:RKLAEVGRVYLFLQPRGPHALGAPSLL-LTGTQLY--GRFGSAIAPLGDLDRDGYNDIAVAAPYGGPSGRGQVLVFLGQSEGLRSRPSQVLDSPFPTGSA: 447
SecStr          : S EE  EEEEE   STT    S SEE-EE  STT--  TTS EEEEESTT SSS EEEEEETT SSSSS EEEEEEB SSSB SS SEEEE  S TTS :    
ExpBur          :eeebebbbbbbbebeeeeeebeeeebe-bebeeee--bebbbbbbebeebbeeeebbbbbbbbebbeeeebbbbbbbbeeebbeeeebbebebebeeebb:    

queryA       579:QWFGRSIHGVKDLEGDGLADVAVGA--ESQMIVLSSRPVVDMVTLMSFSPAEIPVHEVECSYSTSNKMKEGVNITICFQIKSL-IPQFQGRLVANLTYTL: 675
                :  ** *  *  *    *  *  ***    *  *    ***             *     *            **  *       ***        *   *:
8gce_A_1     448:--FGFSLRGAVDIDDNGYPDLIVGAYGANQVAVYRAQPVVKASVQLLVQDSLNPAVK-SCVLPQTKTPVSCFNIQMCVGATGHNIPQ-----KLSLNAEL: 539
SecStr          :--EEEE   SS SSSSSS  EEEEETTTTEEEEE    EEEEEEEEE  S B TT  - EE TTS  EE  EEEEEEEEEE SS  S-----S EEEEEE:    
ExpBur          :--bbebbebeebbeebebbbbbbbbeebbebbbbbbbbbbebebebeeeebbeeeee-eeebeeeeeebbbbebebbbbbebeebee-----ebebebeb:    

queryA       676:QLDGHRTR--RRGLFPGGRHELRRNIAVTTSMSCTDFSFHFPVC------------VQDLISPINVSLNFSLWEEEGTPRDQRAQGKDIPPILRPSLHSE: 761
                :***    *  ** *  *            *         * * *              *  ***  *** **   *         *      *    *  :
8gce_A_1     540:QLDRQKPRQGRRVLLLGSQQ-------AGTTLNLDLGGKHSPICHTTMAFLRDEADFRDKLSPIVLSLNVSLPPTEA--------GMAPAVVLHGDTHVQ: 624
SecStr          :ESSTTS STT  EEETTT S-------SEEEEEEE TT  S EEEEEEEEE  TTT    SS EEEEEEEE     T--------TS  SSEEEE  EEE:    
ExpBur          :bbbeeeeeebebbbbbeeee-------ebeeeebebeeeeeeeeeebebbbbeeeebeeeeeebbbbbebeeeeeee--------eebeebbeeeeeebe:    

queryA       762:TWEIPFEKNCGEDKKCEANLRVSFSPARSRALRLTAFASLSVELSLSNLEEDAYWVQLDLHFPPGLSF-RKVEMLKPHSQIPVSCEELPEESRLLSRALS: 860
                :         ****  *   *    *   *  *   *   *       *  * **   *  * * *    *              *    *      *   :
8gce_A_1     625:E-QTRIVLDCGEDDVCVPQLQLTASVTGS-PLLVGADNVLELQMDAANEGEGAYEAELAVHLPQGAHYMRALSNVEGFERL--ICNQKKENE---TRVVL: 717
SecStr          :E-EE B  SS SSS     EEEE      -S  TTS   EEEEEEEEESSS BTT EEEEE  TTEEE    SS SS SS --   S  SSS--- TT S:    
ExpBur          :e-ebbbeeebeeeeeeebebebeeeeeee-ebbbbbebebebebeebbebbbbbbbbbbbeeeebbeeebbebeeeeeeee--bebbbeeee---eeeeb:    

queryA       861:CNVSSPIFKAGHSVALQMMFNTLVNSSWGDSVELHANVTCNNEDS: 905
                :*    *  *        *          * **         *   :
8gce_A_1     718:CELGNPM-KKNAQIGIAMLVSVGNLEEAGESVSFQLQIRSKNSQN: 761
SecStr          :    S B- TT EEEEEEEEEE   TTS S   EEEEEE S SSS:    
ExpBur          :eeebeeb-eeeeeeeebbebeeeebeeeeeebebebbbbbebeee:

Protein Model on 8gce_A_1_D_1 (TEMPLATE: 8gce )

Input Residue Numbers for Focused Sites