[pdbjlvh2]Protein Model on 8gcd_A_1_K

Protein Model on 8gcd_A_1_K_1 (TEMPLATE: 8gcd )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(ITAL_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [939 aa]	Integrin alpha-IIb :ITA2B_HUMAN
2	b		K 1 (A)	non-polymer(CA)	CALCIUM ION	771C 772G 773E 774D 775K(D) 812E (identity: 83.3 %/30.9 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:8gcd_A_1 identity=30.9%

queryA       396:TPEVRAGYLGYTVTW--LPSRQKTSLLASGAPRYQH-MGRVLLFQEPQGGGHWSQVQTIHGTQIGSYFGGELCGVDVDQDGETELLLIGAPLFYGEQRG-: 491
                : **   ** ** *          *     ***      * *                   * *  ****      **  **   **  **** * * *  :
8gcd_A_1     258:NPEYFDGYWGYSVAVGEFDGDLNTTEYVVGAPTWSWTLGAVEILDS-----YYQRLHRLRGEQMASYFGHSVAVTDVNGDGRHDLL-VGAPL-YMESRAD: 350
SecStr          : GGGTT  TTSEEEEE  SS SSS EEEEEETTHHHHTBEEEE  T-----TS   EEEE SSTTS BTSSEEEE TTSSSS EEE-EEETT- EE  SS:    
ExpBur          :eeebeebebbebbbebbbeeeeeeebbbbbbbbbbeebbbbbbbee-----ebeeeeebeeeeeebebbebbbbbbbbeeeeebbb-bbbbe-beeeeee:    

queryA       492:------GRVFIYQR----RQLGFEEVSELQGDPGYPLGRFGEAITALTDINGDGLVDVAVGAPL---EEQGAVYIFNGRHGGLSPQPSQRIEGTQVLSGI: 578
                :      ***           **      * *   *  **** **  * *   **  * ** **       * *  * *   **   ***           :
8gcd_A_1     351:RKLAEVGRVYLFLQPRGPHALGAPSLL-LTGTQLY--GRFGSAIAPLGDLDRDGYNDIAVAAPYGGPSGRGQVLVFLGQSEGLRSRPSQVLDSPFPTGSA: 447
SecStr          : SSEE  EEEEE   STT    S SEE-EE  STT--  TTS EEE   SS SSS  EEEEETT TTTTSBEEEEE  BTTB  SS SEEEE SS TT  :    
ExpBur          :eeebebbbbbbbebeeeeeeeeeeebe-bebeeee--bebbbbbbebebbbeeeeebbbbbbbebbeeeebbbbbbbbeeebbeeeeebebebebeeebb:    

queryA       579:QWFGRSIHGVKDLEGDGLADVAVGA--ESQMIVLSSRPVVDMVTLMSFSPAEIPVHEVECSYSTSNKMKEGVNITICFQIKSL-IPQFQGRLVANLTYTL: 675
                :  ** *  *  *    *  *  ***    *  *    ***             *     *            **  *       ***        *   *:
8gcd_A_1     448:--FGFSLRGAVDIDDNGYPDLIVGAYGANQVAVYRAQPVVKASVQLLVQDSLNPAVK-SCVLPQTKTPVSCFNIQMCVGATGHNIPQ-----KLSLNAEL: 539
SecStr          :--BTSEEEESS SSSSSS  EEEEETTTTEEEEE    EEEEEEEEEE S B SS  - EE TTS  EEEEEEEEEEEEEE SS  S-----S EEEEEE:    
ExpBur          :--bbebbebeeebeebebbbbbbbbeeebebbbbebbbbbebebebeeeebbebeee-eeebeeeeeebbbbebebbbbbeeeebee-----ebebbbeb:    

queryA       676:QLDGHRTR--RRGLFPGGRHELRRNIAVTTSMSCTDFSFHFPVC------------VQDLISPINVSLNFSLWEEEGTPRDQRAQGKDIPPILRPSLHSE: 761
                :***    *  ** *  *            *         * * *              *  ***  *** **   *         *      *    *  :
8gcd_A_1     540:QLDRQKPRQGRRVLLLGSQQ-------AGTTLNLDLGGKHSPICHTTMAFLRDEADFRDKLSPIVLSLNVSLPPTEA--------GMAPAVVLHGDTHVQ: 624
SecStr          :EES SS GGG  EEETTT  -------SEEEEEEE TT  S EEEEEEEEE  GGG   SSS EEEEEEEE     T--------T   S EEEE  EEE:    
ExpBur          :ebbeeeeeeebbbebbeeee-------beeeeebebeeeeeeeeeeeebbbeeeeebeeeeeebbbbbebeeeeeee--------eeeeebeeeeeeebe:    

queryA       762:TWEIPFEKNCGEDKKCEANLRVSFSPARSRALRLTAFASLSVELSLSNLEEDAYWVQLDLHFPPGLSF-RKVEMLKPHSQIPVSCEELPEESRLLSRALS: 860
                :         ****  *   *    *   *  *   *   *       *  * **   *  * * *    *              *    *      *   :
8gcd_A_1     625:E-QTRIVLDCGEDDVCVPQLQLTASVTGS-PLLVGADNVLELQMDAANEGEGAYEAELAVHLPQGAHYMRALSNVEGFERL--ICNQKKENE---TRVVL: 717
SecStr          :E-EE B  S GGGSS    EEEEEEEES - EETTS  EEEEEEEEEE SS BTTEEEEEEE SS EEEEEE SSGGGSS -- EEEE SSS---SEEEE:    
ExpBur          :e-ebbbbeebeeeeebebebebebeeeee-ebeeebebebebebebbbebbbbbbbbbbbebeeebebeebebeeeeeeeb--ebeeeeeee---ebbbe:    
Contact         :         bbbbb                                    b                                                 

queryA       861:CNVSSPIFKAGHSVALQMMFNTLVNSSWGDSVELHANVTCNNEDS: 905
                :*    *  *        *          * **         *   :
8gcd_A_1     718:CELGNPM-KKNAQIGIAMLVSVGNLEEAGESVSFQLQIRSKNSQN: 761
SecStr          :EEEESSB- TTEEEEEEEEEE    GGG SEEEEEEEEE   SSS:    
ExpBur          :bebbeeb-eeeeebbbebebbbeeeeeeeeebebbbbbebebeee:

Protein Model on 8gcd_A_1_K_1 (TEMPLATE: 8gcd )

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