CurrentView:HTML5 Change to:[JAVA] |
DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(ITAL_HUMAN) | G 1 (G) | polymer(polypeptide(L)) [596 aa] | Integrin alpha-V :ITAV_HUMAN | |
2 | b | H 1 (H) | polymer(polypeptide(L)) [336 aa] | Integrin beta-8 :ITB8_HUMAN | 403Y 406Y 426R 428Q(R) 429H(T) 455Q 456I(M) 457G(A) 459Y 462G(F) 484L 486Y(M) 490R(E) 516Y(F) 520R 545L(Y) 583R(Y) (identity: 41.2 %/31.7 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:6om1_G_1 identity=31.7% |
queryA 403:YLGYTVTWLP-SRQKTSLLASGAPRY-QHMGRVLLFQEPQGGGHWSQVQTIHGTQIGSYFGGELCGVDVDQDGETELLLIGAPLFYGE------QRGGRV: 494 :**** * ** ** * * * * * * *** * * ****** * * *: 6om1_G_1 221:YLGYSVAVGDFNGDGIDDFVSGVPRAARTLGMVYIYD----GKNMSSLYNFTGEQMAAYFGFSVAATDINGDDYADVF-IGAPLFMDRGSDGKLQEVGQV: 315 SecStr : BTSEEEEE SSSSSS EEEEEETTHHHHT EEEEE ----TTT EEEEEE SSTTS TTSEEEEE SSSSS EEE-EEETT EEE TTS EEE BEE: ExpBur :ebbebbbebebeeeeebbbbbbbbebeeeebbbbbbb----beebeeeeebebeeeebbbbebbbbbbbbeeeebbbb-bbbbebeeeeeeeeeebbbbb: Contact :b b b bb bbb b b b b bbbb b queryA 495:FIYQRRQLGFEEVSELQGDPGYPLGRFGEAITALTDINGDGLVDVAVGAPL---EEQGAVYIFNGRHGGLSPQPSQRIEGTQVLSGIQW---------FG: 582 : * * * * *** ** * * ** * * ** * ******* ** *** ** ** **: 6om1_G_1 316:SVSLQRASGDFQTTKLNGFEVF--ARFGSAIAPLGDLDQDGFNDIAIAAPYGGEDKKGIVYIFNGRSTGLNAVPSQILEG-------QWAARSGCPPSFG: 406 SecStr :EEEEE TTS EEEEEEE SSTT--S BTS EEEEESTT SSS EEEEEETT SGGG EEEEE EETTEE SS SEEEE ------- SSS EE: ExpBur :bbbbbeeeeebeeeebebeeee--bebbbbbbebbbbbeeeeebbbbbbbbbeeeeebbbbbbbbeeebbeeebbbebeb-------ebeeeeeeebbbb: Contact : b b b bb queryA 583:RSIHGVKDLEGDGLADVAVGA--ESQMIVLSSRPVVDMVTLMSFSPAEIPVHEVECSYSTSNKMKEGVNITICFQIKSLIPQFQGRLVANLTYTLQLDGH: 680 : * * * * * *** * *** * ** * * * * * * : 6om1_G_1 407:YSMKGATDIDKNGYPDLIVGAFGVDRAILYRARPVITVNAGLEVYPSILNQDNKTCSLPGTALKVSCFNVRFCLKADG-----KGVLPRKLNFQVELLLD: 501 SecStr :EEEEEEE SS SSS EEEEEEGGGTEEEEEEE EEEEEEEEEEESSEE TTT EE SSSS EE EEEEEEEEEEEE----- SS SEEEEEEEEEE : ExpBur :ebbebebebbebebbbbbbbbbbbbebbbbbbbbbbebebebebeeeebebeeeebebeeeeeebbbbebebbbebeb-----eeebeeebebebbbebb: Contact :b b queryA 681:RTR-----RRGLFPGGR---HELRRNIAVTTSMSCTDFSFHF--PVCVQDLISPINVSLNFSL: 733 : ** ** * * * * * * ** *: 6om1_G_1 502:KLKQKXAIRRALFLYSRSPSHSKNMTISRGGLMQCEELIAYLRDESEFRDKLTPITIFMEYRL: 564 SecStr : SS - EEETTT SSEEEEEEEEESSS EEEEEEEEE GGG SS EEEEEEEEE: ExpBur :eeeee-eebbbbbbeeeeeeeeeebebebeeeeeeeebebbbeeeeebeeeeeebbbbbebeb: |