Protein Model on 6djp_A_1_I_1
(TEMPLATE: 
6djp
)Protein Model on 6djp_A_1_I_1
(TEMPLATE: 6djp
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(ITAL_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [593 aa] | Integrin alpha-v :ITAV_HUMAN | |
| 2 | b | I 1 (I) | branched(oligosaccharide) | alpha-D-mannopyranose-(1-4)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 447Q(S) 448V(L) 449Q(Y) 450T(N) (identity: 0.0 %/32.4 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:6djp_A_1 identity=32.4% |
queryA 403:YLGYTVTWLP-SRQKTSLLASGAPRY-QHMGRVLLFQEPQGGGHWSQVQTIHGTQIGSYFGGELCGVDVDQDGETELLLIGAPLFYGE------QRGGRV: 494
:**** * ** ** * * * * * * *** * * ****** * * *:
6djp_A_1 221:YLGYSVAVGDFNGDGIDDFVSGVPRAARTLGMVYIYD----GKNMSSLYNFTGEQMAAYFGFSVAATDINGDDYADVF-IGAPLFMDRGSDGKLQEVGQV: 315
SecStr : BTSEEEEE SSSSS EEEEEETTHHHHT EEEEE ----SSSS EEEEEE SSTTS TTSEEEEE TTSSS EEE-EEETT EEE TTSSEEE EE:
ExpBur :bbbbbbbeeeeeeeeebbbbbbbebbeeebbbbbbbb----eeeeeeeeeeeeeeeebbbbbbbbeeebbeeebebeb-bbbbebeeeeeeeeeeebbbb:
Contact : bbbb
queryA 495:FIYQRRQLGFEEVSELQGDPGYPLGRFGEAITALTDINGDGLVDVAVGAPL---EEQGAVYIFNGRHGGLSPQPSQRIEGTQVLSGIQW--------FGR: 583
: * * * * *** ** * * ** * * ** * ******* ** *** ** ** ** :
6djp_A_1 316:SVSLQRASGDFQTTKLNGFEVF--ARFGSAIAPLGDLDQDGFNDIAIAAPYGGEDKKGIVYIFNGRSTGLNAVPSQILEG-------QWAARSMPPSFGY: 406
SecStr :EEEEE TTS EEEEEEE SSTT-- GGGEEEEEESTT SSS EEEEEETT SSS EEEEE EETTEE SS SEEEE ------- S SSS TTS:
ExpBur :eeeeeeeeeeeeeeeeeeeeee--bbbbebebebbebeeeebbbeeebbbbbeeeebbebbbbeebeeeeeeeeebeeee-------ebeeeeeebbbbe:
queryA 584:SIHGVKDLEGDGLADVAVGA--ESQMIVLSSRPVVDMVTLMSFSPAEIPVHEVECSYSTSNKMKEGVNITICFQI--KSLIPQFQGRLVANLTYTLQLDG: 679
:* * * * * *** * *** * ** * * * * * * ** :
6djp_A_1 407:SMKGATDIDKNGYPDLIVGAFGVDRAILYRARPVITVNAGLEVYPSILNQDNKTCSLPGTALKVSCFNVRFCLKADGKGVLPR-----KLNFQVELLLDK: 501
SecStr :SEEEEE SSSSS EEEEEEGGGTEEEEEEE EEEEEEEEEES SEE TT EE TTSS EE EEEEEEEEEEEESSS S-----EEEEEEEEEEST:
ExpBur :bbbeeeeeeebebbbebebbbeebbbeebbbbbebeeeeeeeeeeeeeeeeeeeeebeeeeeebbebeebbebbeeeeeeeee-----eebbeeeeebbe:
queryA 680:HRTR---RRGLFPGGR---HELRRNIAVTTSMSCTDFSFHF--PVCVQDLISPINVSLNFSL: 733
: ** ** * * * * * * ** *:
6djp_A_1 502:LKQKGAIRRALFLYSRSPSHSKNMTISRGGLMQCEELIAYLRDESEFRDKLTPITIFMEYRL: 563
SecStr :TTTTTS EEETTTTBSEEEEEEEEESSS EEEEEEEEE TTT SS EEEEEEEEE:
ExpBur :ebeeeeebbbbbbeeeeeeeeeebebeeeeeeeeeeeeebebeeeebeeeeeebbebbeeee:
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[assembly_id:1]
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