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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(ITAL_HUMAN) | E 1 (E) | polymer(polypeptide(L)) [587 aa] | Integrin alpha-V :ITAV_HUMAN | |
2 | b | F 1 (F) | polymer(polypeptide(L)) [242 aa] | Integrin beta-6 :ITB6_HUMAN | 403Y 406Y 426R 429H(T) 456I(M) 457G(A) 459Y 462G(F) 484L 486Y(M) 490R(E) 516Y(F) 520R 523E(S) 545L(Y) 583R(Y) (identity: 37.5 %/32.4 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:5ffo_E_1 identity=32.4% |
queryA 403:YLGYTVTWLP-SRQKTSLLASGAPRY-QHMGRVLLFQEPQGGGHWSQVQTIHGTQIGSYFGGELCGVDVDQDGETELLLIGAPLFYGE------QRGGRV: 494 :**** * ** ** * * * * * * *** * * ****** * * *: 5ffo_E_1 221:YLGYSVAVGDFNGDGIDDFVSGVPRAARTLGMVYIYD----GKNMSSLYNFTGEQMAAYFGFSVAATDINGDDYADVF-IGAPLFMDRGSDGKLQEVGQV: 315 SecStr : BTSEEEEE SSSSS EEEEEETTHHHHT EEEEE ----TTT EEEEEE SSTTS TTSEEEEE SSSS EEE-EEETT EEE TTS EEE EE: ExpBur :ebbbbbbbbebeeeeeebbbbbbbebeeeebbbbbbb----beebeeeeebebeeeebebbbbbbbbbbbeeeebbbb-bbbbebeeebeeeeeebbbbb: Contact :b b b b bb b b b b b b queryA 495:FIYQRRQLGFEEVSELQGDPGYPLGRFGEAITALTDINGDGLVDVAVGAPL---EEQGAVYIFNGRHGGLSPQPSQRIEGTQVLSGIQW---------FG: 582 : * * * * *** ** * * ** * * ** * ******* ** *** ** ** **: 5ffo_E_1 316:SVSLQRASGDFQTTKLNGFEVF--ARFGSAIAPLGDLDQDGFNDIAIAAPYGGEDKKGIVYIFNGRSTGLNAVPSQILEG-------QWAARSGCPPSFG: 406 SecStr :EEEEE TTS EEEEEEE SSTT--S TTSEEEEEESTT SSS EEEEEETT TGGG EEEEE EETTEE SS SEEEE ------- SSS TT: ExpBur :bbbbbeeeeeeeeeebebeeee--bebbbbbbbbbbbbeeeeebbbbbbbbbbeeebbbbbbbbbeeebbbeeeebebeb-------ebeeeeeeebbbb: Contact : b b b b bb queryA 583:RSIHGVKDLEGDGLADVAVGA--ESQMIVLSSRPVVDMVTLMSFSPAEIPVHEVECSYSTSNKMKEGVNITICFQI--KSLIPQFQGRLVANLTYTLQLD: 678 : * * * * * *** * *** * ** * * * * * * **: 5ffo_E_1 407:YSMKGATDIDKNGYPDLIVGAFGVDRAILYRARPVITVNAGLEVYPSILNQDNKTCSLPXXXXKVSCFNVRFCLKADGKGVLPR-----KLNFQVELLLD: 501 SecStr :SEEEEEE TT SSS EEEEEEGGGTEEEEE B EEEEEEEEEEE SS SS B S ---- BEEEEEEEEEEEESSS S-----EEEEEEEEEES: ExpBur :ebbebebebbebebbbbbbbbbbbbbbbbbbbbbbbebeeebebeeeeeeeeeeebeee----ebbbbebebbbebebeeebee-----ebebebebebb: Contact :b b queryA 679:GHRTR---RRGLFPGGR---HELRRNIAVTTSMSCTDFSFHF--PVCVQDLISPINVSLNFSL: 733 : ** ** * * * * * * ** *: 5ffo_E_1 502:KLKQKGAIRRALFLYSRSPSHSKNMTISRGGLMQCEELIAYLRDESEFRDKLTPITIFMEYRL: 564 SecStr :TTS TTS EEETTT SSEEEEEEEEESSS EEEEEEEEE GGG S SS EEEEEEEE: ExpBur :eebeeeeeebbbbbeeeeeeeeeebebeeeeeeeeeeeebbbeeeeebeeeeeebbbbbebeb: |