[pdbjlvh2]Protein Model on 4um8_A_1_B

Protein Model on 4um8_A_1_B_1 (TEMPLATE: 4um8 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(ITAL_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [591 aa]	INTEGRIN ALPHA-V :ITAV_HUMAN
2	b		B 1 (B)	polymer(polypeptide(L)) [423 aa]	INTEGRIN BETA-6 :ITB6_HUMAN	403Y 406Y 426R 428Q(R) 429H(T) 456I(M) 457G(A) 459Y 462G(F) 484L 486Y(M) 490R(E) 516Y(F) 520R 545L(Y) 583R(Y) (identity: 37.5 %/31.7 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:4um8_A_1 identity=31.7%

queryA       403:YLGYTVTWLP-SRQKTSLLASGAPRY-QHMGRVLLFQEPQGGGHWSQVQTIHGTQIGSYFGGELCGVDVDQDGETELLLIGAPLFYGE------QRGGRV: 494
                :**** *              ** **     * *        *   *      * *   ***      *   *       ******         *  * *:
4um8_A_1     221:YLGYSVAVGDFNGDGIDDFVSGVPRAARTLGMVYIYD----GKNMSSLYNFTGEQMAAYFGFSVAATDINGDDYADVF-IGAPLFMDRGSDGKLQEVGQV: 315
SecStr          : BTSEEEEE  SSSSS EEEEEETTHHHHT EEEEE ----TTT  EEEEEE SSTTS TTSEEEE  SSSSS   EE-EEETT EEE TTS EEE  EE:    
ExpBur          :ebbbbbbbbebeeeeebbbbbbbbebeeeebbbbbbb----beebeeeeebebeeeebebbbbbbebbbbeeeebbbb-bbbbebeeeeeeeeeebbbbb:    
Contact         :b  b                    b  bb                          bb b  b                     b b   bb b  b    

queryA       495:FIYQRRQLGFEEVSELQGDPGYPLGRFGEAITALTDINGDGLVDVAVGAPL---EEQGAVYIFNGRHGGLSPQPSQRIEGTQVLSGIQW--------FGR: 583
                :     *  *      * *       *** **  * *   **  * *  **       * *******  **   ***  **       **        ** :
4um8_A_1     316:SVSLQRASGDFQTTKLNGFEVF--ARFGSAIAPLGDLDQDGFNDIAIAAPYGGEDKKGIVYIFNGRSTGLNAVPSQILEG-------QWAARSCPPSFGY: 406
SecStr          :EEEEE TTS EEEEEEE SSTT--S TTSEEEEEESSS SSS EEEEEETT SGGG  EEEEE B SSSB SS SEEEE -------    SSS   TTS:    
ExpBur          :bbbbbeeeeebeeeebebeeee--bebbbbbbebbbbbeeeeebbbbbbbbbeeeebbbbbbbbbeeebbeeeeebebeb-------ebeeeeeebbbbe:    
Contact         :                     b   b                        b                                          bb    b

queryA       584:SIHGVKDLEGDGLADVAVGA--ESQMIVLSSRPVVDMVTLMSFSPAEIPVHEVECSYSTSNKMKEGVNITICFQIKSLIPQFQGRLVANLTYTLQLDGHR: 681
                :*  *  *    *  *  ***      *    ***          *         **           *   *           * *   *     *    :
4um8_A_1     407:SMKGATDIDKNGYPDLIVGAFGVDRAILYRARPVITVNAGLEVYPSILNQDNKTCSLPGTALKVSCFNVRFCLKADG-----KGVLPRKLNFQVELLLDK: 501
SecStr          :EEEEEE SS SSS EEEEEEGGGTEEEEE B  EEEE  EEEEE SEE TT   S  TTSS    EEEEEEEE EEE-----SSS  SEEEEEEEEEETS:    
ExpBur          :bbebeeebbebebbbbbbbbbbbbebbbbbbbbbbebeeebebeeeebebeeeeeebeeeeeebbbbebebbbebee-----eeebeeebebebebebbe:    
Contact         :                    b                                                                               

queryA       682:TR-----RRGLFPGGR---HELRRNIAVTTSMSCTDFSFHF--PVCVQDLISPINVSLNFSL: 733
                :       ** **   *   *     *     * *              *   **       *:
4um8_A_1     502:LKXXXAIRRALFLYSRSPSHSKNMTISRGGLMQCEELIAYLRDESEFRDKLTPITIFMEYRL: 563
SecStr          :  ---    EEETTT  SEEEEEEEEEBTS  EEEEEEEEE  GGG    SS EEEEEEEEE:    
ExpBur          :ee---eeebbbbbeeeeeebeeebebeeeeeeeebebebbbeeeeebeebeeebbbbbebeb:

Protein Model on 4um8_A_1_B_1 (TEMPLATE: 4um8 )

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