[pdbjlvh2]Protein Model on 1tye_A_1_B

Protein Model on 1tye_A_1_B_1 (TEMPLATE: 1tye )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(ITAL_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [452 aa]	Integrin alpha-IIb :ITAB_HUMAN
2	b		B 1 (B)	polymer(polypeptide(L)) [440 aa]	Integrin beta-3 :ITB3_HUMAN	400R(F) 401A(D) 403Y 406Y 426R(T) 429H(W) 455Q 456I(M) 457G(A) 459Y 462G(H) 483P 484L 487G(M) 516Y 520R 545L(Y) 583R(F) (identity: 44.4 %/37.2 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:1tye_A_1 identity=37.2%

queryA       396:TPEVRAGYLGYTVTW--LPSRQKTSLLASGAPRYQH-MGRVLLFQEPQGGGHWSQVQTIHGTQIGSYFGGELCGVDVDQDGETELLLIGAPLFYGEQRG-: 491
                : **   ** ** *          *     ***      * *                     *  ****      **  **   **  **** * * *  :
1tye_A_1     227:NPEYFDGYWGYSVAVGEFDGDLNTTEYVVGAPTWSWTLGAVEILDS-----YYQRLHRLRAEQMASYFGHSVAVTDVNGDGRHDLL-VGAPL-YMESRAD: 319
SecStr          : GGGTT  TTSEEEEE  SS TTS EEEEEETTHHHHT EEEEE T-----T  EEEEEE SSTTS TTSEEEEE TTSSSS EEE-EE TT- EEEETT:    
ExpBur          :eeebeebebbebbbebbbeeeeeeebbbbbbbbbbeebbbbbbbbe-----ebeeeeebebebeebbbbbbbbbbbbbeeeeebbb-bbbbe-beeeeee:    
Contact         :    bb b  b                     b  bb                         bbb b  b                    bb  b     

queryA       492:------GRVFIYQR----RQLGFEEVSELQGDPGYPLGRFGEAITALTDINGDGLVDVAVGAPL---EEQGAVYIFNGRHGGLSPQPSQRIEGTQVLSGI: 578
                :      ***           **      * *   *  **** **  * *   **  * ** **       * *  * *   **   ***         * :
1tye_A_1     320:RKLAEVGRVYLFLQPRGPHALGAPSLL-LTGTQLY--GRFGSAIAPLGDLDRDGYNDIAVAAPYGGPSGRGQVLVFLGQSEGLRSRPSQVLD-SPFPTGS: 415
SecStr          :TEEEE BEEEEE   SSS    S SEE-EE  STT--  BTSEEEE   SS SSS  EEEEETT SSSSS EEEEE B SSSB SS SEEEE-  S TT :    
ExpBur          :eeebebbbbbbbbbeeeeeebeeeebe-bebeeee--bebbbbbbebbbbeeeeeebbbbbbbebbeeeebbbbbbbbeeebbeeeeebebe-bebeeeb:    
Contact         :  b b                             b   b                        b                                    

queryA       579:QWFGRSIHGVKDLEGDGLADVAVGA--ESQMIVLSSRP: 614
                :  ** *  *  *    *  *  ***    *  *    *:
1tye_A_1     416:A-FGFSLRGAVDIDDNGYPDLIVGAYGANQVAVYRAQP: 452
SecStr          : -TTSEEEEEE SS SSS EEEEEEGGGTEEEEE B  :    
ExpBur          :b-bbebbebebebeeeeebbbbbbbbeebebbbbbbee:    
Contact         :    b                    b

Protein Model on 1tye_A_1_B_1 (TEMPLATE: 1tye )

Input Residue Numbers for Focused Sites