[pdbjlvh2]Protein Model on 7tlt_A_1_E

Protein Model on 7tlt_A_1_E_1 (TEMPLATE: 7tlt )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(HLAA_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [275 aa]	HLA class I histocompatibility antigen, A alpha chain :B0UXQ0_HUMAN
2	b		E 1 (E)	polymer(polypeptide(L)) [9 aa]	Spike protein S1 peptide :SPIKE_SARS2	29M 31Y 83Y 86Q(L) 87E(Q) 90N 91V 93A 94Q 97T 101D(N) 104T 105L 108Y 121I(M) 123Y 138R 140D 167T 170K 171W 176E(V) 180L 183Y 187T 191W 195Y (identity: 81.5 %/94.2 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:7tlt_A_1 identity=94.2%

queryA        25:GSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDQETRNVKAQSQTDRVDLGTLRGYYNQSEAGSHTIQIMYG: 124
                :******** ****************************************************  ************  ******************* ***:
7tlt_A_1      25:GSHSMRYFTTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDLQTRNVKAQSQTDRANLGTLRGYYNQSEAGSHTIQMMYG: 124
SecStr          :  EEEEEEEEEE  SSS S EEEEEEEETTEEEEEEETTSSS S EE STTGGGS HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT  TTS  EEEEEEE:    
ExpBur          :eebebbbebebebeeeeeebebebbbebbebebbebbbebeeeebbeebebbeebeeebbeebbeebeeebeebeeebeebeeeeeeeeeeebebebbbb:    
Contact         :    b b                                                   b  bb  bb bb  b   b  bb  b            b b 

queryA       125:CDVGSDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAAHEAEQLRAYLDGTCVEWLRRYLENGKETLQRTDPPKTHMTHHPISDHEAT: 224
                :******************************************* ******  ******** ********************** ********  ******:
7tlt_A_1     125:CDVGSDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITQRKWEAARVAEQLRAYLEGTCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHEAT: 224
SecStr          :EEE TT  EEEEEEEEEETTEEEEEE TTSS EEESSTTHHHHHHHHHHTTHHHHHHHHHHTHHHHHHHHHHHHTHHHHS  B  EEEEEEEESSSSEEE:    
ExpBur          :bbbbeebeeeebbbebbbeeeebbbbeeebeebeeeeebbeebbeeeeeeeebeebeeebeeebbeebeebbeebeeebeeeeebeeebeeeeeeeeebb:    
Contact         :             b b                          b  bb    b   b  b   b   b   b                             

queryA       225:LRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWE: 299
                :****** ************************************** ****** **********************:
7tlt_A_1     225:LRCWALSFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWASVVVPSGQEQRYTCHVQHEGLPKPLTLRWE: 299
SecStr          :EEEEEEEEBSS  EEEEEETTEEE TTEEE   EE SSS EEEEEEEEEETT GGGEEEEEE TT SS EEEE  :    
ExpBur          :bebbbeebbbbebebebbeeeeebeeeeeebeeeeeeeebbebbbbbebeeeebeebbbebebeebeeeeebeee:

Protein Model on 7tlt_A_1_E_1 (TEMPLATE: 7tlt )

Input Residue Numbers for Focused Sites