[pdbjlvh2]Protein Model on 5nme_F_1_I

Protein Model on 5nme_F_1_I_1 (TEMPLATE: 5nme )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:2]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(HLAA_HUMAN)	F 1 (F)	polymer(polypeptide(L)) [276 aa]	HLA class I histocompatibility antigen, A-2 alpha chain :1A02_HUMAN
2	b		I 1 (I)	polymer(polypeptide(L)) [200 aa]	T-cell receptor Alpha chain	86Q(G) 89R 90N(K) 93A 175H 178E 179Q 181R 182A 183Y 187T 190E (identity: 83.3 %/93.1 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:5nme_F_1 identity=93.1%

queryA        25:GSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDQETRNVKAQSQTDRVDLGTLRGYYNQSEAGSHTIQIMYG: 124
                :************************************************************* *** *** *** ******************** * ***:
5nme_F_1       1:GSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDGETRKVKAHSQTHRVDLGTLRGYYNQSEAGSHTVQRMYG: 100
SecStr          :  EEEEEEEEEE  SSSSS EEEEEEEETTEEEEEEETTSSS S EE STTGGGS HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT  SSS  EEEEEEE:    
ExpBur          :eebbbebebebebeeeeeebebebbbebbebebbebbeebeeeebbeebebbeebeeebbebbbeebeebeeebeeebeebeeeeeeeeeeebebebbbb:    
Contact         :                                                             b  bb  b                               

queryA       125:CDVGSDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAAHEAEQLRAYLDGTCVEWLRRYLENGKETLQRTDPPKTHMTHHPISDHEAT: 224
                :****** ****** * ********** ************** ** ****** ******** ********************** ********  ******:
5nme_F_1     101:CDVGSDWRFLRGYHQYAYDGKDYIALKEDLRSWTAADMAAQTTKHKWEAAHVAEQLRAYLEGTCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHEAT: 200
SecStr          :EEE SSS EEEEEEEEEETTEEEEEE SSSSSEEESSSHHHHHHHHHHHTTHHHHHHHHHHTHHHHHHHHHHHHTHHHHT  B  EEEEEEEE SSSEEE:    
ExpBur          :bebbeeeeeeebbbebbbeeeebbbbeeebeebeeeeebbeebeeebeeeeebeebeeebeeebbeebeebbeebeeebeeeeebeeebeeeeeeeeebb:    
Contact         :                                                  b  bb bbb   b  b                                  

queryA       225:LRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWE: 299
                :****** ********************************************* **********************:
5nme_F_1     201:LRCWALSFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHVQHEGLPKPLTLRWE: 275
SecStr          :EEEEEEEEBSS EEEEEEETTEEE TTEEE   EE SSS EEEEEEEEEETT GGGEEEEEEETT SS EEE   :    
ExpBur          :bbbbbeebbbbebebebbeeeeebeeebeeeeeeeeeeebbebbbbbebeeeebeebbbebebeebeeeeebeee:

Protein Model on 5nme_F_1_I_1 (TEMPLATE: 5nme )

Input Residue Numbers for Focused Sites