Protein Model on 8tie_J_1_B_1 (TEMPLATE: 8tie )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(NUP98_HUMAN) J 1 (n) polymer(polypeptide(L)) [599 aa] NUP145 isoform 1 :A0A8H4C085_YEASX
2 b B 1 (b) polymer(polypeptide(L)) [647 aa] Nucleoporin NUP85 :NUP85_YEAST 1323S(R) (identity: 0.0 %/24.9 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:8tie_J_1 identity=24.9%
queryA      1301:ERRRAFSRWLSCTATPQIEEEVSLTQKNSPVEAVFSYLTGKRISEACSLAQQSGDHRLALLLSQFVGSQS--VRELLTMQLVDWHQLQADSFIQDERLRI:1398
                :**      *      * ***           *  * **       *  **  *    *  * *   **     * *   **  *        *      *:
8tie_J_1     869:ERHCRLTSWIVSQIGPEIEEKIR--NSSNEIEQIFLYLLLNDVVRASKLAIESKNGHLSVLIS-YLGSNDPRIRDLAELQLQKWST--GGCSIDKNISKI: 963
SecStr          :HHHHHHHHHHHHHHHHHHHHHHH--H   HHHHHHHHHHH  HHHHHHHHHTT  SSHHHHHH-HSS   HHHHHHHHHHHHHHHH--H S   HHHHHH:    
ExpBur          :ebbeebbebbeeebbeebeeebe--ebeeebeebbbbbbbeebeebeebbeeeeeeebeebbe-ebeebeeebbeebeeebeebee--eeeeeeebbebb:    
Contact         :                      b                                                                             

queryA      1399:FALLAGKPVWQLSEKKQINVCSQLDWKRSLAIHLWYLLPPTASISRALSMYEEAFQNTSDSDRYACSPLPSYLEGSGCVIAEEQNSQTPLRDVCFHLLKL:1498
                :  ** * *   *   *     *   *   *   * *      *           *    *       *            *   *             **:
8tie_J_1     964:YKLLSGSPFEGLFSLKELE--SEFSWLCLLNLTLCYGQIDEYSLESLVQSHLDKFSLPYDD------PIGVIFQ----LYAANENTE-----------KL:1040
SecStr          :HHHHHT SSSSSS   TTT--TTS HHHHHHHHHHSS TTTTTHHHHHHHHHTTS   SSS------TTHHHHH----HHHS TTHH-----------HH:    
ExpBur          :bbbbbbbbbbeeeebeebe--eebeebbbbbbbbebeebeeeebbebbeebbeebebebee------eebbbbb----bbbbeeebe-----------eb:    

queryA      1499:YSDRHYDLNQLLEPRSITADPLDYRLSWHLWEVLRALNYTHLSAQCEGVLQASYAGQLESEGLWEWAIFVLLHIDNSGIREKAVRELLTRHCQLLETPES:1598
                :*           * *  *   **    * *   **       *           * ***   *     **          *     *  *   **     :
8tie_J_1    1041:YK----------EVRQRT-NALDVQFCWYLIQTLRFNGTRVFSKETSDEATFAFAAQLEFAQLHGHSLFVSCFLNDDKAAEDTIKRLVMREITLLRA---:1126
SecStr          :HH----------HHTTS -    SSHHHHHHHHHTTTTSS   HHHHHHHHHHHHHHHHHT  SSTTHHHHH  S TTTHHHHHHHHHHH SSSSSS---:    
ExpBur          :be----------ebeeee-beebebbbbbbbbbbbbeeebebeeebbbebbeebbebbbeeeeebbbbbbbbbbeeeebbeebbeebbeebbebbee---:    

queryA      1599:WAKETFLTQKLRVPAKWIHEAKAVRAHMESDKHLEALCLFKAEHWNRCHKLIIRH------LASDAIINENYDYLKGFLEDLAPPERSSLIQDWETSGLV:1692
                :          *  *   *  * *     *     *   *            *         *      *     *   *      **      *  *  *:
8tie_J_1    1127:-STNDHILNRLKIPSQLIFNAQALKDRYEGNYLSEVQNLLLGSSYDLAEMAIVTSLGPRLLLSNNPVQNNELKTLREILNEFPDSERDK----WSVSINV:1221
SecStr          :-SSHHHHHHTSS  HHHHHHHHHHHHHHHT HHHHHHHHHHTT HHHHHHHHHHTHHHHHHHS  TTT HHHHHHHHHHHHS HHHHTT----  SSHHH:    
ExpBur          :-eebbeebbebebbeebbeebebeebeeeeeeeebbebbbebebeeebbebbbeebbbebbeeeeeeeeebbeebbebbeebeeebeee----beebbeb:    

queryA      1693:YLDYIRVI:1700
                :   *    :
8tie_J_1    1222:FEVYLKLV:1229
SecStr          :HHHHHHHH:    
ExpBur          :bbbbbebb:    


Input Residue Numbers for Focused Sites

ex) 2,15,123