Protein Model on 8tie_C_1_F_1
(TEMPLATE: 
8tie
)Protein Model on 8tie_C_1_F_1
(TEMPLATE: 8tie
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(NUP98_HUMAN) | C 1 (c) | polymer(polypeptide(L)) [610 aa] | NUP145 isoform 1 :A0A8H4C085_YEASX | |
| 2 | b | F 1 (f) | polymer(polypeptide(L)) [726 aa] | Nucleoporin NUP84 :NUP84_YEAST | 1331V(I) 1343I(V) 1344S(V) 1347C(S) 1348S(K) 1351Q(I) 1354G(K) 1355D(N) 1356H(G) 1357R(H) 1359A(S) 1360L(V) 1363S 1365F(Y) 1366V(L) 1368S 1369Q(N) 1370S(D) 1373E(D) 1374L 1377M(L) 1378Q 1381D(K) 1382W 1387A(G) 1388D(G) 1389S(C) 1390F(S) 1391I 1392Q(D) 1395R(I) 1438P(D) 1439T(E) (identity: 18.2 %/24.9 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:8tie_C_1 identity=24.9% |
queryA 1301:ERRRAFSRWLSCTATPQIEEEVSLTQKNSPVEAVFSYLTGKRISEACSLAQQSGDHRLALLLSQFVGSQS--VRELLTMQLVDWHQLQADSFIQDERLRI:1398
:** * * *** * * ** * ** * * * * ** * * ** * * *:
8tie_C_1 869:ERHCRLTSWIVSQIGPEIEEKIR--NSSNEIEQIFLYLLLNDVVRASKLAIESKNGHLSVLIS-YLGSNDPRIRDLAELQLQKWST--GGCSIDKNISKI: 963
SecStr :HHHHHHHHHHHHHSHHHHHHHHH--H HHHHHHHHTTTT HHHHHHHHHHTT HHHHHHHT-T S HHHHHHHHHHHHHHHH--HSS HHHHHH:
ExpBur :bbbeebbebbbeebbeebeeebe--ebeeeeebbebbbbbebeeebeebbeebebeebbeebe-eeeebeeebbeebeeebeeeee--eeeeeeeeebbe:
Contact : b bb bb b bbbb bb b bb bbbbb bb bb bb bbbbbb b
queryA 1399:FALLAGKPVWQLSEKKQINVCSQLDWKRSLAIHLWYLLPPTASISRALSMYEEAFQNTSDSDRYACSPLPSYLEGSGCVIAEEQNSQTPLRDVCFHLLKL:1498
: ** * * * * * * * * * * * * * * * **:
8tie_C_1 964:YKLLSGSPFEGLFSLKELE--SEFSWLCLLNLTLCYGQIDEYSLESLVQSHLDKFSLPYDD------PIGVIFQ----LYAANENTE-----------KL:1040
SecStr :HHHHHT STTSSS GGGG--GTS HHHHHHHHHHTTTSSSS HHHHHHHHHHHS TT ------HHHHHHH----HHHTTT HH-----------HH:
ExpBur :bbbebeebbebeeebeebe--eebebbbbbbbbbbbbbbeeeebbebbebbbebbebeeeb------ebbbbbb----bbbbeeebe-----------eb:
Contact : bb
queryA 1499:YSDRHYDLNQLLEPRSITADPLDYRLSWHLWEVLRALNYTHLSAQCEGVLQASYAGQLESEGLWEWAIFVLLHIDNSGIREKAVRELLTRHCQLLETPES:1598
:* * * * ** * * ** * * *** * ** * * * ** :
8tie_C_1 1041:YK----------EVRQRT-NALDVQFCWYLIQTLRFNGTRVFSKETSDEATFAFAAQLEFAQLHGHSLFVSCFLNDDKAAEDTIKRLVMREITLLRA---:1126
SecStr :HH----------HHHTT - HHHHHHHHHHHHTTTSS TTHHHHHHHHHHHHHHHHT SHHHHHHHTT HHHHHHHHHHHHHT SGGGSS---:
ExpBur :ee----------ebeeee-eeebebbbbbbbbbbbeeeebebbeeebbebbeebbebbbebebebbbbbbbbbbbeeebbeebbeebbeeebeebee---:
queryA 1599:WAKETFLTQKLRVPAKWIHEAKAVRAHMESDKHLEALCLFKAEHWNRCHKLIIRH------LASDAIINENYDYLKGFLEDLAPPERSSLIQDWETSGLV:1692
: * * * * * * * * * * * * * ** * * *:
8tie_C_1 1127:-STNDHILNRLKIPSQLIFNAQALKDRYEGNYLSEVQNLLLGSSYDLAEMAIVTSLGPRLLLSNNPVQNNELKTLREILNEFPDSERDK----WSVSINV:1221
SecStr :-SSHHHHHHHTTS HHHHHHHHHHHHHHHT HHHHHHHHHHTT HHHHHHHHHSSS TTSSSS TTT TTHHHHHHTSSSS SSSGGG----S SSHHH:
ExpBur :-eeebeebbeeebeeebbeebbbebbeeeeeeeebbebbbebeeeeebbebebeebbbeebeebeeeeeeebeebbeebeebeeeebee----bbebbeb:
queryA 1693:YLDYIRVI:1700
: * :
8tie_C_1 1222:FEVYLKLV:1229
SecStr :HHHHHHHH:
ExpBur :bbebbebb:
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[assembly_id:1]
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