Protein Model on 7tdz_BA_1_A_1 (TEMPLATE: 7tdz )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(NUP98_HUMAN) BA 1 (f) polymer(polypeptide(L)) [639 aa] Nuclear pore complex protein Nup96 :A0A1L8HBE3_XENLA
2 b A 1 (H) polymer(polypeptide(L)) [789 aa] Nuclear pore complex protein :A2RV69_XENLA 1644N 1680S(C) 1681S(K) 1682L(H) 1683I 1684Q 1687E 1728S(K) 1732Q(L) 1785P 1789R (identity: 54.5 %/60.7 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:7tdz_BA_1 identity=60.7%
queryA      1143:FRVGWGPNWTLANSGEQLNGSHELENHQIADSMEFGFLPNPVAVKPLTESPFKVHLEKLSLRQRKPDEDMKLYQTPLELKLKHSTVHVDELCPLIVPNLG:1242
                :***********   *  *                                  *** ***** *         *  ***  ** * *     **   ** *:
7tdz_BA_1      1:FRVGWGPNWTLVHNGDKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKVHMEKLSLEQK--SRELQSYLMPLEIELKNSSVDRSAQCPHFKPNAG:  98
SecStr          :   EEETTTEEEESS   ----------------------------------  EEEE      --GGGHHHHHHHHHHHHHTEEEE SSSS EEEE SS:    
ExpBur          :eeeeeeeebebebeeeee----------------------------------eebebeeebeee--eebeebbeebbebbbebbeeeeeeebbbbebeee:    

queryA      1243:VAVIHDYADWVKEASGDLPEAQ-IVKHWSLTWTLCEALWGHLKELDSQLNEPREYIQILERRRAFSRWLSCTATPQIEEEVSLTQKNSPVEAVFSYLTGK:1341
                :** ***** **   *    *    ** * ******* *** ****   * ** **   **** *** **  **   *******      ****** *** :
7tdz_BA_1     99:VAAIHDYAGWVRNLSNEAGELEAVVKQWGLTWTLCESLWGQLKELEASLDEPNEYVRNLERRKAFSHWLAHTAEERIEEEVSLYGPERHVEAVFSFLTGG: 198
SecStr          :SHHHHHHHHHHHHHHHH SS  HHHHHHHHHHHHHHHHHS  HHHHS SS   HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTTHHHHHHHHHTTT:    
ExpBur          :eebbeebbebbeeeeeeeeeeeeebebbbebbbbbbbbbbebeebeeeeeebeeeeeeebbbebbeebbeebbeeebeebeeeeeeeebbbbbbbbbbbe:    

queryA      1342:RISEACSLAQQSGDHRLALLLSQFVGSQSVRELLTMQLVDWHQLQADSFIQDERLRIFALLAGKPVWQLSEKKQINVCSQLDWKRSLAIHLWYLLPPTAS:1441
                :*** ** *** ****** ***** ****  ***   *****  ** *  ** **** * ** * ***  *    *********** ** **** ***** :
7tdz_BA_1    199:RISDACRLAQKSGDHRLSLLLSQMVGSQEMRELISLQLVDWNKLQVDHYIQEERLRVFCLLSGTPVWRSSDNRSINVCSQLDWKRTLAVHLWYMLPPTAT: 298
SecStr          : HHHHHHHHHHTT HHHHHHHHT SS HHHHHHHHHHHHHHHHTT GGGS HHHHHHHHHHHT SEEE TTS EEETTTT  HHHHHHHHHHTTS TT  :    
ExpBur          :eeebbbeebeeeebeebbebbeebeeeeebeeebeeebeebeeeeebeeeeeeebbbbbbbbbeeebebeeeeebebbeebbbbbbbbbbbbbbbeeebe:    

queryA      1442:ISRALSMYEEAFQNTSDSDRYACSPLPSYLEGSGCVIAEEQNSQ--TPLRDVCFHLLKLYSDRHYDLNQLLEPRSITADPLDYRLSWHLWEVLRALNYTH:1539
                :*  **  ** ***       *** *** ***        *         **** ******* * *** *** * * * ************ ** ******:
7tdz_BA_1    299:IAQALRLYERAFQEHEEGEPYACYPLPPYLEDCSISLGDEPSAKFSSLQRDVCVHLLKLYSERQYDLCQLLDPSSVTPDPLDYRLSWHLWMVLQALNYTH: 398
SecStr          :HHHHHHHHHHHHS BTTB   S     HHHHTS     S  HHHHTTS   HHHHHHHHHH TT  HHHHT GGGT S TT  HHHHHHHHHHHHTT   :    
ExpBur          :bbebbeebbebbeeeeeeeebbebbbbbeeeeeeeeeeeebeeebeebbebbbbbbbbbeeeeebebbebbebebbbeeeebbbbbbbbbbbbebbebee:    

queryA      1540:LSAQCEGVLQASYAGQLESEGLWEWAIFVLLHIDNSGIREKAVRELLTRHCQLLETPESWAKETFLTQKLRVPAKWIHEAKAVRAHMESDKHLEALCLFK:1639
                :**    * * **** ***  *************    ***  ***** * *   * *** *** **   * *** * ***** *     * * *** * *:
7tdz_BA_1    399:LSEHRQGTLHASYAAQLENVGLWEWAIFVLLHIPHPHIREAGVRELLNRQCVVRESPESLAKENFLIHRLCVPAQWVHEAKAIRSRRDGDRHKEALYLLK: 498
SecStr          :S HHHHHHHHHHHHHHHHHHT HHHHHHHHTT SSHHHHHHHHHHHHHHH  SS  HHHHHHHHHHHHTS   HHHHHHHHHHHHHHHT HHHHHHHHHH:    
ExpBur          :beeeebeebbebbbebbbbbebbbbbbbbbbbbeeeeebbebbeebbeebbebeeeeebeeebebbeeebbbeeebbbbbbbeebeeeeeeeebbebbbe:    

queryA      1640:AEHWNRCHKLIIRHLASDAIINENYDYLKGFLEDLAPPERSSLIQDWETSGLVYLDYIRVIEMLRHIQQVDCSGNDLEQLHIKVTSLCSRIEQIQCYSAK:1739
                :   ** ****  **** ** ***** **  **  *  **    ****** * ********* **  ***   **  ** ** ** ***   * * ** **:
7tdz_BA_1    499:GHQWNPCHKLVTRHLAADAVINENYRYLQSFLGELSNPEHCKHIQDWETAGKVYLDYIRVIDMLNLIQQDESSGCELEKLHTKVMSLCKWVELIHCYTAK: 598
SecStr          :TT HHHHHHHHHHHTHHHHHHTT HHHHHHHHHHHTSHHHHTTSTTTTTTHHHHHHHHHHHHHHHHHHHTT  HHHHHHHHHHHHHHHHHHTT    SHH:    
ExpBur          :beebeebbebbbeebbbbbbeeeebebbeebbeebbeeebbeebeebeebbebbbbbbebbebbeebeeeeeeeeebeebbeebbebbeebeebeeeeee:    
Contact         :    b                                   bbbbb  b                                        b   b       

queryA      1740:DRLAQSDMAKRVANLLRVVLSLHHPPDRTSDSTPDPQRVPLRLLAPHIGRLPMPEDYAMDELRSLTQSYLRELAVGS:1816
                :****** ******* *******  **   ***   * *********************  *** *********   *:
7tdz_BA_1    599:DRLAQSEMAKRVANILRVVLSLQQPPESMSDSS-EP-RVPLRLLAPHIGRLPMPEDYALEELRGLTQSYLRELICDS: 673
SecStr          :HHHHHHHHHHHHHHHHHHHHHHTS TT   TT -  -   HHHHHHHHTTS   HHHHHHHHHHHHHHHHHHHHH  :    
ExpBur          :beebbbebbeebbebbeebbbeeeeeeeeeeee-ee-eeebeebeebbeebebeeebeeebeeebeeeeeeeeeeee:    
Contact         :                                             b   b

Input Residue Numbers for Focused Sites

ex) 2,15,123