[pdbjlvh2]Protein Model on 7tbi_AB_1_CB

Protein Model on 7tbi_AB_1_CB_1 (TEMPLATE: 7tbi )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(NUP98_HUMAN)	AB 1 (S2)	polymer(polypeptide(L)) [511 aa]	Nup145C
2	b		CB 1 (T2)	polymer(polypeptide(L)) [274 aa]	Sec13	1513R 1514S(Q) 1550A(F) 1551S(A) 1554G(A) 1555Q 1557E 1558S(F) 1577I(A) 1588R 1589H(E) 1622V(L) 1625H(R) 1626M(Y) (identity: 28.6 %/26.4 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:7tbi_AB_1 identity=26.4%

queryA      1301:ERRRAFSRWLSCTATPQIEEEVSLTQKNSPVEAVFSYLTGKRISEACSLAQQSGDHRLALLLSQFVGSQS--VRELLTMQLVDWHQLQADSFIQDERLRI:1398
                :**      *      * ***           *  * **       *  **  *    *  * *   **     * *   **  *        *      *:
7tbi_AB_1    173:ERHCRLTSWIVSQIGPEIEEKIR--NSSNEIEQIFLYLLLNDVVRASKLAIESKNGHLSVLIS-YLGSNDPRIRDLAELQLQKWST--GGCSIDKNISKI: 267
SecStr          :HHHHHHHHHHHHHHHHHHHHHHH--H   HHHHHHHHHHTT HHHHHHHHHHTT HHHHHHHT-TTTS  HHHHHHHHHHHHHHTT--T S   HHHHHH:    
ExpBur          :ebbeebbebbeeebbeebeeebe--ebeeebebbbbbbbbeeeeebbebbeebeeeebbeebe-ebeebeeeebeebeeebeeeee--eeeeeeebbbeb:    

queryA      1399:FALLAGKPVWQLSEKKQINVCSQLDWKRSLAIHLWYLLPPTASISRALSMYEEAFQNTSDSDRYACSPLPSYLEGSGCVIAEEQNSQTPLRDVCFHLLKL:1498
                :  ** * *   *   *     *   *   *   * *      *           *    *       *            *   *             **:
7tbi_AB_1    268:YKLLSGSPFEGLFSLKELE--SEFSWLCLLNLTLCYGQIDEYSLESLVQSHLDKFSLPYDD------PIGVIFQ----LYAANENTE-----------KL: 344
SecStr          :HHHHHT SSSSSS GGGGG--GTS HHHHHHHHHHSTTTTTS HHHHHHHHHTT    TT ------HHHHHHH----HHHHGGGHH-----------HH:    
ExpBur          :bbbbbbebbeeeeebeebe--eebebbbbbbbbbbbbebeeeebeebbebbbeebebeeee------eebbbbe----bbbbeeebe-----------eb:    

queryA      1499:YSDRHYDLNQLLEPRSITADPLDYRLSWHLWEVLRALNYTHLSAQCEGVLQASYAGQLESEGLWEWAIFVLLHIDNSGIREKAVRELLTRHCQLLETPES:1598
                :*           * *  *   **    * *   **       *           * ***   *     **          *     *  *   **     :
7tbi_AB_1    345:YK----------EVRQRT-NALDVQFCWYLIQTLRFNGTRVFSKETSDEATFAFAAQLEFAQLHGHSLFVSCFLNDDKAAEDTIKRLVMREITLLRA---: 430
SecStr          :HH----------HHHHH - SS HHHHHHHHHHHHHTSS    HHHHHHHHHHHHHHHHHTT HHHHHHHHTT S HHHHHHHHHHHHHHHTTTTSS---:    
ExpBur          :be----------ebeeeb-eebeebbbbbbbbbbebeeebebeeebbbebbeebbebbbebebbbbbbbbbbbbbeeebbeebbeebbeebbeebee---:    
Contact         :              bb                                   bb  bb bb                  b          bb         

queryA      1599:WAKETFLTQKLRVPAKWIHEAKAVRAHME:1627
                :          *  *   *  * *     *:
7tbi_AB_1    431:-STNDHILNRLKIPSQLIFNAQALKDRYE: 458
SecStr          :-SHHHHHHHTTT  HHHHHHHHHHHHHHH:    
ExpBur          :-eebbeebbebebbeebbeebeeeeeeee:    
Contact         :                       b  bb

Protein Model on 7tbi_AB_1_CB_1 (TEMPLATE: 7tbi )

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