[pdbjlvh2]Protein Model on 6lk8_G

Protein Model on 6lk8_G_1 (TEMPLATE: 6lk8 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description
1	a	A(NUP98_HUMAN)	G 1 (G)	polymer(polypeptide(L)) [618 aa]	Nuclear pore complex protein Nup96 :A0A1L8HBE3_XENLA

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:6lk8_G_1 identity=52.2%

queryA      1021:DTSQEICSPRLPISASHSSKTRSLVGGLLQSKFTSGAFLSPSVSVQECRTPRAASLMNIPSTSSWSVPPPLTSVFTMPSPAPEVPLKTVGTRRQLGLVPR:1120
                :*      ****    **   * *   ******* *          *    **      *     **** **   *          * *******  *** :
6lk8_G_1     138:DPYPDVRSPRL-FPSSHAKRTSSM--GLLQSKFASPSISRXXXXAQGSHSPR------ILPVTPWSVPAPLAPTFVIXXXXXXXHLRTVGTRRQQELVPL: 228
SecStr          :TTTT   TT H-HHHHHHGGGS  -- HHHHHHHHHHHH ---- HHHHHHH------HHHHHHH  STTTHHHHH ------- HHHHHHHHHHHHHHH:    
ExpBur          :eeeeeeeeebe-eeeeeebeeeee--eeeeeeeeeeeeee----eeeeeeeb------eeeeeeeeeeeebeeebee-------eeeeeebeeeeeeeee:    

queryA      1121:EKSVTYGKGKLLMDMALFMGRSFRVGWGPNWTLANSGEQLNGSHELENHQIADSMEFGFLPNPVAVKPLTESPFKVHLEKLSLRQRKPDEDMKLYQTPLE:1220
                :***** * * ** ** *****************   *  *      *  *  *    **** *   *  ***  *** ***** *         *  ***:
6lk8_G_1     229:EKSVTHGRGSLLIDMGLFMGRSFRVGWGPNWTLVHNGDKLXXRLNAEEDQNMDTIDYGFLPKPTSAKSXTESXXKVHMEKLSLEQK--SRELQSYLMPLE: 326
SecStr          :HHHHHHHHHHHH     SS       HHHHHHHHHHHHH -- HHHHTTS SS      SSS      -   --      S SS  --HHHHH  SHHHH:    
ExpBur          :eeeeeeebeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee--eeeeeeeeeeeeeeeeeeeeeeeeee-eee--eeeeeeeeeeee--eeeeeeeeeeee:    

queryA      1221:LKLKHSTVHVDELCPLIVPNLGVAVIHDYADWVKEASGDLPEAQ-IVKHWSLTWTLCEALWGHLKELDSQLNEPREYIQILERRRAFSRWLSCTATPQIE:1319
                :  ** * *     **   ** *** ***** **   *    *    ** * ******* *** **       ** **   **** *** **  **   **:
6lk8_G_1     327:IELKNSSVDRSAQCPHFKPNAGVAAIHDYAGWVRNLSNEAGELEAVVKQWGLTWTLCESLWGQLKXXXXXXXEPNEYVRNLERRKAFSHWLAHTAEERIE: 426
SecStr          :HHHHHH     SS       SHHHHHHHHHHHHHHHHS  SS  HHHHHHHHHHHHHHHHHHHT ------- HHHHHHHHHHHHHHHHHHHHHTHHHHH:    
ExpBur          :eeeeeeeeeeeeeebeeeeeeeeeeeeebeeeeeeeeeeeeeeeeeeeeeeebeeeeeebeeeee-------eeeeeeebeebbeeeeebbeeebbeeee:    

queryA      1320:EEVSLTQKNSPVEAVFSYLTGKRISEACSLAQQSGDHRLALLLSQFVGSQSVRELLTMQLVDWHQLQADSFIQDERLRIFALLAGKPVWQLSEKKQINVC:1419
                :*****      ****** ***  ** ** ***   **** ***** ****  ***   *****  **       **** * ** * ***  *    ****:
6lk8_G_1     427:EEVSLYGPERHVEAVFSFLTGXXISDACRLAQXXXDHRLSLLLSQMVGSQEMRELISLQLVDWNKLQXXXXXXXERLRVFCLLSGTPVWRSSDNRSINVC: 526
SecStr          :HHHHHHTTT  SSHHHHHHH -- HHHHHHH --- HHHHHHHTTTT  STHHHHHHHHHHHHHHH -------  HHHHHHHTS TTT TTT STTGGG:    
ExpBur          :eeeeebeeeeeeeeeeebeee--eeeeeeeee---eeeeeeeeeeeeeeeeebeeebeeeeeeeeee-------eeebebbeeebeeeebeeeebeeeee:    

queryA      1420:SQLDWKRSLAIHLWYLLPPTASISRALSMYEEAFQNTSDSDRYACSPLPSYLEGSGCVIAEEQNSQTPL--RDVCFHLLKLYSDRHYDLNQLLEPRSITA:1517
                :******* ** **** ***** *  **  ** ***                                    **** ******* * *** *** * * * :
6lk8_G_1     527:SQLDWKRTLAVHLWYMLPPTATIAQALRLYERAFQEHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRDVCVHLLKLYSERQYDLCQLLDPSSVTP: 626
SecStr          :GTS HHHHHHHHHHHS SSTTHHHHHHHHHHHH    ---------------------------------   HHHHHHHHHT  S   SSSHHHHHHTT:    
ExpBur          :eeeeeebebbebbebbeeeeebbeeebbebeeeeeee---------------------------------eeeeeeebeeeeeeeeeeeeeeeeeeeeee:    

queryA      1518:DPLDYRLSWHLWEVLRALNYTHLSAQCEGVLQASYAGQLESEGLWEWAIFVLLHIDNSGIREKAVRELLTRHCQLLETPESWAKETFLTQKLRVPAKWIH:1617
                :*   ******** ** ********    * * **** ***  *************    ***  ***** * *   * *** *** **   * *** * *:
6lk8_G_1     627:DXXXYRLSWHLWMVLQALNYTHLSEHRQGTLHASYAAQLENVGLWEWAIFVLLHIPHPHIREAGVRELLNRQCVVRESPESLAKENFLIHRLCVPAQWVH: 726
SecStr          : --- HHHHHHHHHHHHHSSS    SHHHHHHHHHHHHHHTTS HHHHHHHHHHS  SSSHHHHHHHHHHHHTSSTHHHHSTTTHHHHHHHHS   S HH:    
ExpBur          :e---ebeebeebeebbeeeeeeeeeeeeeeebeebeeeebeeebeeeeeeeeeeeeeeeebeeebeeeeeeebeeebeeeeeeeebeeeeeeeeeeeeeb:    

queryA      1618:EAKAVRAHMESDKHLEALCLFKAEHWNRCHKLIIRHLASDAIINENYDYLKGFLEDLAPPERSSLIQDWETSGLVYLDYIRVIEMLRHIQQVDCSGNDLE:1717
                :**** *             * *        **  **** **           **  *  **    **         ******* **  *      *  **:
6lk8_G_1     727:EAKAIRSRRDXXXXXXXXYLLKGHQXXXXXKLVTRHLAADAXXXXXXXXXXSFLGELSNPEHCKHIQXXXXXXXXXLDYIRVIDMLNLIXXXXXXGCELE: 826
SecStr          :HHHHHHHHH -------- HHHHH ----- HHHHHHHHT ---------- HHHHHHHHHHHHHH --------- HHHHHHHHHHH ------ HHHH:    
ExpBur          :eeeebbeeee--------eebbeee-----eeeeeeeeeee----------eeeeeeebeebeeeee---------eebeeebeeeeee------eeeeb:    

queryA      1718:QLHIKVTSLCSRIEQIQCYSAKDRLAQSDMAKRVANLL:1755
                : ** ** ***        * ******** ******* *:
6lk8_G_1     827:KLHTKVMSLCXXXXXXXXYTAKDRLAQSEMAKRVANIL: 864
SecStr          :HHHHHHHHH -------- HHHHHHHHHHHHHHHHHH :    
ExpBur          :eebbeebeee--------eeeeebeeebeeebeeeeee:

Protein Model on 6lk8_G_1 (TEMPLATE: 6lk8 )

Input Residue Numbers for Focused Sites