Protein Model on 3jro_A_1_B_1
(TEMPLATE: 
3jro
)Protein Model on 3jro_A_1_B_1
(TEMPLATE: 3jro
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(NUP98_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [701 aa] | Fusion Protein of Protein Transport Protein SEC13 and Nucleoporin NUP145 :SEC13_YEAST:NU145_YEAST | |
| 2 | b | B 1 (C) | polymer(polypeptide(L)) [379 aa] | Nucleoporin NUP84 :NUP84_YEAST | 1344S(V) 1348S(K) 1351Q(I) 1354G(K) 1355D(N) 1356H(G) 1357R(H) 1358L 1359A(S) 1360L(V) 1361L 1363S 1365F(Y) 1368S 1369Q(N) 1370S(D) 1374L 1375L(A) 1377M(L) 1378Q 1381D(K) 1382W 1389S(C) 1390F(S) 1391I 1395R(I) 1399F(Y) 1438P(D) (identity: 28.6 %/26.4 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:3jro_A_1 identity=26.4% |
queryA 1301:ERRRAFSRWLSCTATPQIEEEVSLTQKNSPVEAVFSYLTGKRISEACSLAQQSGDHRLALLLSQFVGSQS--VRELLTMQLVDWHQLQADSFIQDERLRI:1398
:** * * *** * * ** * ** * * * * ** * * ** * * *:
3jro_A_1 462:ERHCRLTSWIVSQIGPEIEEKIR--NSSNEIEQIFLYLLLNDVVRASKLAIESKNGHLSVLIS-YLGSNDPRIRDLAELQLQKWST--GGCSIDKNISKI: 556
SecStr :HHHHHHHHHHHHHHHHHHHTTTT--S S TTHHHHHHTTTT HHHHHHHHHHTT HHHHHGG-G SS HHHHHHHHHHHHHHHT--TT HHHHHH:
ExpBur :ebbeebbebbeeebbeebeeebe--ebeeebeebbbebbbeeeeebbebbeebeeeebbeebe-ebeebbeebbeebeeebeeeee--eeeeeeebbbbb:
Contact : b b b bbbbbbbb b b bbbbb bb bb bb bbb b
queryA 1399:FALLAGKPVWQLSEKKQINVCSQLDWKRSLAIHLWYLLPPTASISRALSMYEEAFQNTSDSDRYACSPLPSYLEGSGCVIAEEQNSQTPLRDVCFHLLKL:1498
: ** * * * * * * * * * * * * * * * **:
3jro_A_1 557:YKLLSGSPFEGLFSLKELE--SEFSWLCLLNLTLCYGQIDEYSLESLVQSHLDKFSLPYDD------PIGVIFQ----LYAANENTE-----------KL: 633
SecStr :HHTSSS SSSTT GGGG--TTS HHHHHHHHHHTS TTTS HHHHHHHHHTT TT ------HHHHHHH----HHH STTHH-----------HH:
ExpBur :ebbbbbbbbeeeeebeebe--eebebbbbbbbbbbbbbbeeeebeebbeebbeebebeeee------eebbbbe----bbbeeeebb-----------eb:
Contact :b b
queryA 1499:YSDRHYDLNQLLEPRSITADPLDYRLSWHLWEVLRALNYTHLSAQCEGVLQASYAGQLESEGLWEWAIFVLLHIDNSGIREKAVRELLTRHCQLLETPES:1598
:* * * * ** * * ** * * *** * ** * * * ** :
3jro_A_1 634:YK----------EVRQRT-NALDVQFCWYLIQTLRFNGTRVFSKETSDEATFAFAAQLEFAQLHGHSLFVSCFLNDDKAAEDTIKRLVUREITLLRA---: 719
SecStr :HH----------HHHTT -TTS HHHHHHHHHHTTTTT S HHHHHHHHHHHHHHHHHTT HHHHHHHHHT S HHHHHHHHHHHHHHS TTSST---:
ExpBur :be----------ebbeeb-eebbbbbbbbbbbbbeeeeebebeeebbbebbeebbbbbbbeeebbbbbbbbbbbeebebbeebbebbbbbbbeebee---:
queryA 1599:WAKETFLTQKLRVPAKWIHEAKAVRAHME:1627
: * * * * * *:
3jro_A_1 720:-STNDHILNRLKIPSQLIFNAQALKDRYE: 747
SecStr :-TTTTTTTTTTT HHHHHHHHHHHHHHH:
ExpBur :-eeeeebbeebebbeebbeebeebbeebe:
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[assembly_id:1]
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