Protein Model on 3iko_B_1_C_1
(TEMPLATE: 
3iko
)Protein Model on 3iko_B_1_C_1
(TEMPLATE: 3iko
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(NUP98_HUMAN) | B 1 (B) | polymer(polypeptide(L)) [434 aa] | Nucleoporin NUP145C :NU145_YEAST | |
| 2 | b | C 1 (C) | polymer(polypeptide(L)) [419 aa] | Nucleoporin NUP84 :NUP84_YEAST | 1344S(V) 1347C(S) 1348S(K) 1351Q(I) 1354G(K) 1355D(N) 1356H(G) 1357R(H) 1358L 1359A(S) 1360L(V) 1361L 1363S 1365F(Y) 1367G 1368S 1369Q(N) 1370S(D) 1371V(I) 1374L 1378Q 1381D(K) 1390F(S) 1391I 1392Q(D) 1395R(I) 1399F(Y) 1438P(D) 1439T(E) (identity: 27.6 %/26.4 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:3iko_B_1 identity=26.4% |
queryA 1301:ERRRAFSRWLSCTATPQIEEEVSLTQKNSPVEAVFSYLTGKRISEACSLAQQSGDHRLALLLSQFVGSQS--VRELLTMQLVDWHQLQADSFIQDERLRI:1398
:** * * *** * * ** * ** * * * * ** * * ** * * *:
3iko_B_1 153:ERHCRLTSWIVSQIGPEIEEKIR--NSSNEIEQIFLYLLLNDVVRASKLAIESKNGHLSVLIS-YLGSNDPRIRDLAELQLQKWST--GGCSIDKNISKI: 247
SecStr :HHHHHHHHHHHHHHHHHHHHHHH--H HHHHHHHHHHTT HHHHHHHHHHTT HHHHHHHT-TTTS HHHHHHHHHHHHHHTT--T S HHHHHH:
ExpBur :ebbeebbebbeeebbeebeeebe--ebeeebebbbbbbbbeebeebbebbeebeeeebbeebe-ebeebeeeebeebbeebeebee--eeeeeeebebeb:
Contact : b bb b bbbbbbbb b b bbbbbbb b b b bbb b
queryA 1399:FALLAGKPVWQLSEKKQINVCSQLDWKRSLAIHLWYLLPPTASISRALSMYEEAFQNTSDSDRYACSPLPSYLEGSGCVIAEEQNSQTPLRDVCFHLLKL:1498
: ** * * * * * * * * * * * * * * * **:
3iko_B_1 248:YKLLSGSPFEGLFSLKELE--SEFSWLCLLNLTLCYGQIDEYSLESLVQSHLDKFSLPYDD------PIGVIFQ----LYAANENTE-----------KL: 324
SecStr :HHHHTT SSSSTT GGGGG--GTS HHHHHHHHHHTTTTTTS HHHHHHHHHTTS TT ------HHHHHHH----HHHTGGGHH-----------HH:
ExpBur :bbbbbbebbeeeeebeebe--eebebbbbbbbbbbbbbbeeeebeebbebbbeebebeeee------eebbbbe----bbbbeeebe-----------eb:
Contact :b bb
queryA 1499:YSDRHYDLNQLLEPRSITADPLDYRLSWHLWEVLRALNYTHLSAQCEGVLQASYAGQLESEGLWEWAIFVLLHIDNSGIREKAVRELLTRHCQLLETPES:1598
:* * * * ** * * ** * * *** * ** * * * ** :
3iko_B_1 325:YK----------EVRQRT-NALDVQFCWYLIQTLRFNGTRVFSKETSDEATFAFAAQLEFAQLHGHSLFVSCFLNDDKAAEDTIKRLVMREITLLRA---: 410
SecStr :HH----------HHHTT - SS HHHHHHHHHHHHTTSS HHHHHHHHHHHHHHHHTTT HHHHHHHHHT S HHHHHHHHHHHHHTTTTGGGS---:
ExpBur :be----------ebeeeb-eebeebbbbbbbbbbebeeebebeeebbbebbeebbebbbebebbbbbbbbbbbbbeeebbeebbeebbeebbeebee---:
queryA 1599:WAKETFLTQKLRVPAKWIHEAKAVRAHME:1627
: * * * * * *:
3iko_B_1 411:-STNDHILNRLKIPSQLIFNAQALKDRYE: 438
SecStr :-SHHHHHHHTTT HHHHHHHHHHTTTTT:
ExpBur :-eebbeebbebebbeebbeebebeebeee:
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[assembly_id:1]
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