[pdbjlvh2]Protein Model on 3iko_B_1_A

Protein Model on 3iko_B_1_A_1 (TEMPLATE: 3iko )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(NUP98_HUMAN)	B 1 (B)	polymer(polypeptide(L)) [434 aa]	Nucleoporin NUP145C :NU145_YEAST
2	b		A 1 (A)	polymer(polypeptide(L)) [274 aa]	Protein transport protein SEC13 :SEC13_YEAST	1513R 1514S(Q) 1554G(A) 1557E 1558S(F) 1580K(D) 1587T(M) 1588R 1590C(I) 1619A 1622V(L) 1623R(K) 1625H(R) 1626M(Y) (identity: 28.6 %/26.4 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:3iko_B_1 identity=26.4%

queryA      1301:ERRRAFSRWLSCTATPQIEEEVSLTQKNSPVEAVFSYLTGKRISEACSLAQQSGDHRLALLLSQFVGSQS--VRELLTMQLVDWHQLQADSFIQDERLRI:1398
                :**      *      * ***           *  * **       *  **  *    *  * *   **     * *   **  *        *      *:
3iko_B_1     153:ERHCRLTSWIVSQIGPEIEEKIR--NSSNEIEQIFLYLLLNDVVRASKLAIESKNGHLSVLIS-YLGSNDPRIRDLAELQLQKWST--GGCSIDKNISKI: 247
SecStr          :HHHHHHHHHHHHHHHHHHHHHHH--H   HHHHHHHHHHTT HHHHHHHHHHTT HHHHHHHT-TTTS  HHHHHHHHHHHHHHTT--T S   HHHHHH:    
ExpBur          :ebbeebbebbeeebbeebeeebe--ebeeebebbbbbbbbeebeebbebbeebeeeebbeebe-ebeebeeeebeebbeebeebee--eeeeeeebebeb:    

queryA      1399:FALLAGKPVWQLSEKKQINVCSQLDWKRSLAIHLWYLLPPTASISRALSMYEEAFQNTSDSDRYACSPLPSYLEGSGCVIAEEQNSQTPLRDVCFHLLKL:1498
                :  ** * *   *   *     *   *   *   * *      *           *    *       *            *   *             **:
3iko_B_1     248:YKLLSGSPFEGLFSLKELE--SEFSWLCLLNLTLCYGQIDEYSLESLVQSHLDKFSLPYDD------PIGVIFQ----LYAANENTE-----------KL: 324
SecStr          :HHHHTT SSSSTT GGGGG--GTS HHHHHHHHHHTTTTTTS HHHHHHHHHTTS   TT ------HHHHHHH----HHHTGGGHH-----------HH:    
ExpBur          :bbbbbbebbeeeeebeebe--eebebbbbbbbbbbbbbbeeeebeebbebbbeebebeeee------eebbbbe----bbbbeeebe-----------eb:    

queryA      1499:YSDRHYDLNQLLEPRSITADPLDYRLSWHLWEVLRALNYTHLSAQCEGVLQASYAGQLESEGLWEWAIFVLLHIDNSGIREKAVRELLTRHCQLLETPES:1598
                :*           * *  *   **    * *   **       *           * ***   *     **          *     *  *   **     :
3iko_B_1     325:YK----------EVRQRT-NALDVQFCWYLIQTLRFNGTRVFSKETSDEATFAFAAQLEFAQLHGHSLFVSCFLNDDKAAEDTIKRLVMREITLLRA---: 410
SecStr          :HH----------HHHTT - SS HHHHHHHHHHHHTTSS    HHHHHHHHHHHHHHHHTTT HHHHHHHHHT S HHHHHHHHHHHHHTTTTGGGS---:    
ExpBur          :be----------ebeeeb-eebeebbbbbbbbbbebeeebebeeebbbebbeebbebbbebebbbbbbbbbbbbbeeebbeebbeebbeebbeebee---:    
Contact         :              bb                                       b  bb                     b      bb b        

queryA      1599:WAKETFLTQKLRVPAKWIHEAKAVRAHME:1627
                :          *  *   *  * *     *:
3iko_B_1     411:-STNDHILNRLKIPSQLIFNAQALKDRYE: 438
SecStr          :-SHHHHHHHTTT  HHHHHHHHHHTTTTT:    
ExpBur          :-eebbeebbebebbeebbeebebeebeee:    
Contact         :                    b  bb bb

Protein Model on 3iko_B_1_A_1 (TEMPLATE: 3iko )

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