[pdbjlvh2]Protein Model on 8qy6_A_1_G

Protein Model on 8qy6_A_1_G_1 (TEMPLATE: 8qy6 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(IL6RB_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [584 aa]	Interleukin-6 receptor subunit beta :IL6RB_MOUSE
2	b		G 1 (G)	branched(oligosaccharide)	2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	43N 92T (identity: 100.0 %/72.9 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:8qy6_A_1 identity=72.9%

queryA        24:LLDPCGYISPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSVTFTDIASLNIQLTCNILTFGQLEQNVYGITIISG: 123
                :** ***** ** ****  ***** ***** *     *** ********   * ** * **** *******      ******* *** ****** *  **:
8qy6_A_1      24:LLEPCGYIYPEFPVVQRGSNFTAICVLKEACLQHYYVNASYIVWKTNHAAVPREQVTVINRTTSSVTFTDVVLPSVQLTCNILSFGQIEQNVYGVTMLSG: 123
SecStr          :    SEEEESSS EEETTSEE  EEEE HHHHHHH   GGGEEEEETTEE  TTTEEEEETTEEEE EES   SEEEEEEEEEETTTEEEEEEEEEEEEE:    
ExpBur          :eeeebbebeeeebebeeeeebebebebeeebbeeeebebeebebebeeeebeeeebeeeeeebbbbebeebeeeebebbbbbebeeeeeeebeebebebb:    
Contact         :                   b                                                b                               

queryA       124:LPPEKPKNLSCIVNEGKKMRCEWDGGRETHLETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPN: 223
                : ** ** ** ******* * * ** **** **** ******** ** **  *  *  ** * *   * **************** *  ****** **** :
8qy6_A_1     124:FPPDKPTNLTCIVNEGKNMLCQWDPGRETYLETNYTLKSEWATEKFPDCQSKHGT--SCMVSYMPTYYVNIEVWVEAENALGKVSSESINFDPVDKVKPT: 221
SecStr          :      EEEEEEEETTS  EEEEE  S  SS  EEEEEEE SS B   EE SSSS--EEE SS   TTS EEEEEEEEETTEEEE   EEE GGGGEE  :    
ExpBur          :bebeebeebebbbbbeeebebebeeeeebebebebbbebeeeeeebeebebeebe--ebebebebeeeeebebbbebebeeeeeebeeeebebbeebebe:    

queryA       224:PPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYE: 323
                :** **** *********** *          **  *********** * * *** * * ******************  *  ************** ***:
8qy6_A_1     222:PPYNLSVTNSEELSSILKLSWVSSGLGGLLDLKSDIQYRTKDASTWIQVPLEDTMSPRTSFTVQDLKPFTEYVFRIRSIKDSGKGYWSDWSEEASGTTYE: 321
SecStr          :  EEEEEEE SS TTEEEEEEE  HHHHTS EEEEEEEEETT    EE  GGGG SS SEEEEES  TT EEEEEEEEEETT  S        EEEE   :    
ExpBur          :ebeebebeebeeebeebebebebebeeeebebbbbbbbbbeeeeeeeebeeeebeeeeeebebeebeeebebbbebebbbeeeeeeebeebeebebebeb:    

queryA       324:DRPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSHLQNYTVNATKLTVNLTNDRYLATLTVRNLVGKSDAAVLTIPACDFQA: 423
                :****  ******  *** * ** * * ** **  *********** **  **  * ***  * ********** * *  ** **** *******     *:
8qy6_A_1     322:DRPSRPPSFWYKTNPSHGQEYRSVRLIWKALPLSEANGKILDYEVILTQSKSVSQTYTVTGTELTVNLTNDRYVASLAARNKVGKSAAAVLTIPSPHVTA: 421
SecStr          :   SS  EEEEEE   TT SEEEEEEEEE   HHHH S EEEEEEEEE TTS  EEEEESSSEEEEEEESS EEEEEEEEESS B   EEEEE  TT   :    
ExpBur          :eebeeebbbbbbeeebeeeeebebebbbeebeeebbbbeeebbbbebeeeeeeeeeeebeeeeeebebeeeebebbbbbebeeeebeebebbbbbeeeee:    

queryA       424:THPVMDLKAFPKDNMLWVEWTTPRESVKKYILEWCVLSDKAPCITDWQQEDGTVHRTYLRGNLAESKCYLITVTPVYADGPGSPESIKAYLKQAPPSKGP: 523
                :   *  ******** ****** *   * **********  ***  ****** ** ** *** * ***** **** * * ***  ** ******* *  **:
8qy6_A_1     422:AYSVVNLKAFPKDNLLWVEWTPPPKPVSKYILEWCVLSENAPCVEDWQQEDATVNRTHLRGRLLESKCYQITVTLVFATGPGGSESLKAYLKQAAPARGP: 521
SecStr          :  B EEEEEEEETTEEEEEEE  SS  SEEEEEEEE  SSS    EEEEEETT  EEE  S   TT EEEEEEEEEETTEEEEEEEEEEESS    SS  :    
ExpBur          :eeebeebeeeeeeeebebbbeebeeebebbbbbbbebeeeeeeeeebbbbeeeeeebebeeebeeeebbebbbbbbbeebbbeeeeeebbbebeebeebb:    

queryA       524:TVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTIIGNETAVNVDSSHTEYTLSSLTSDTLYMVRMAAYTDEGGKDGPEFTFT: 609
                :************** *** *** ******** * ***  * *  * ************* **************************:
8qy6_A_1     522:TVRTKKVGKNEAVLAWDQIPVDDQNGFIRNYSISYRTSVGKEMVVHVDSSHTEYTLSSLSSDTLYMVRMAAYTDEGGKDGPEFTFT: 607
SecStr          : EEEEEE SS EEEEE    TTT  S   EEEEEEE SSS  EEEEEETT SEEEE S  TT  EEEEEEEEETTEEEE   EEE :    
ExpBur          :ebeeeeeeeeebbbbbeebeeebbebebeebbbbbebeeeeeeeeebeeeeeeeebeebeeeeebbbebbbebeeeeeebeeeebe:

Protein Model on 8qy6_A_1_G_1 (TEMPLATE: 8qy6 )

Input Residue Numbers for Focused Sites