[pdbjlvh2]Protein Model on 8qy5_F_1_E

Protein Model on 8qy5_F_1_E_1 (TEMPLATE: 8qy5 )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(IL6RB_HUMAN)	F 1 (D)	polymer(polypeptide(L)) [584 aa]	Interleukin-6 receptor subunit beta :IL6RB_MOUSE
2	b		E 1 (F)	polymer(polypeptide(L)) [201 aa]	Interleukin-6 receptor subunit alpha :IL6RA_HUMAN	235E 236L 239I 241K 254I(D) 275E 276D 281R 284F 285T 287Q (identity: 90.9 %/73.1 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:8qy5_F_1 identity=73.1%

queryA        24:LLDPCGYISPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSVTFTDIASLNIQLTCNILTFGQLEQNVYGITIISG: 123
                :** ***** ** ****  ***** ***** *     *** ********   * ** * **** *******      ******* *** ****** *  **:
8qy5_F_1      24:LLEPCGYIYPEFPVVQRGSNFTAICVLKEACLQHYYVNASYIVWKTNHAAVPREQVTVINRTTSSVTFTDVVLPSVQLTCNILSFGQIEQNVYGVTMLSG: 123
SecStr          :    SEEEESSS EEETTSEE  EEEE HHHHHHTT  GGGEEEEETTEE  TTTEEE SSSEEEE EES   SEEEEEEEEEETTTEEEEEEEEEEEEE:    
ExpBur          :eeeebbebeeeebebeeeeebebebebeeebbeeeebebeebebbbeeeebeeeebeeeeeebbbbebeebeeeebebbbbbebeeeeeeebeebebebb:    

queryA       124:LPPEKPKNLSCIVNEGKKMRCEWDGGRETHLETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPN: 223
                : ** ** ** ******* * * ** **** **** ******** ** **  *  *  ** * *   * **************** *  ****** **** :
8qy5_F_1     124:FPPDKPTNLTCIVNEGKNMLCQWDPGRETYLETNYTLKSEWATEKFPDCQSKHGT--SCMVSYMPTYYVNIEVWVEAENALGKVSSESINFDPVDKVKPT: 221
SecStr          :      EEEEEEEETTS  EEEEE  S  SS  EEEEEEE SSSB   EE SSSS--EEE SS   TTS EEEEEEEEETTEEEE   EEE GGGGEE  :    
ExpBur          :bebeebeebebbbbbeeebebebeeeeebebebebbbebeeeeeebeebebeebe--ebebebebeeeeebebbbbbebeeeeeebeeeebbbbeebebe:    

queryA       224:PPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYE: 323
                :** **** *********** *          **  *********** * * *** * * ******************  *  ************** ***:
8qy5_F_1     222:PPYNLSVTNSEELSSILKLSWVSSGLGGLLDLKSDIQYRTKDASTWIQVPLEDTMSPRTSFTVQDLKPFTEYVFRIRSIKDSGKGYWSDWSEEASGTTYE: 321
SecStr          :  EEEEEEE SS TTEEEEEEE  HHHHTS EEEEEEEEETT    EE  TTGGGSS SEEEEES  TT EEEEEEEEEETT  S        EEEE   :    
ExpBur          :ebeebebeeeeeebbbbebebebebeeeebebbbbbbbbeeeeeeeeebeeeebeeeeeeeebeebeeebebbbebebbbeeeeeeebeebeebebebbb:    
Contact         :           bb  b b            b                    bb    b  bb b                                    

queryA       324:DRPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSHLQNYTVNATKLTVNLTNDRYLATLTVRNLVGKSDAAVLTIPACDFQA: 423
                :****  ******  *** * ** * * ** **  *********** **  **  * ***  * ********** * *  ** **** *******     *:
8qy5_F_1     322:DRPSRPPSFWYKTNPSHGQEYRSVRLIWKALPLSEANGKILDYEVILTQSKSVSQTYTVTGTELTVNLTNDRYVASLAARNKVGKSAAAVLTIPSPHVTA: 421
SecStr          :   SS  EEEEEE   TT SEEEEEEEEE   HHHH S EEEEEEEEE TTS  EEEEESSSEEEEEEESS EEEEEEEEESS B   EEEEE  TT   :    
ExpBur          :eebeeebbbbbbeeeeeeeeebebebbbeebeeebbbbeeebbbbebeeeeeeeeeeebeeeeeebebeeeebebbbbbebeeeebeebebbbbbeeeee:    

queryA       424:THPVMDLKAFPKDNMLWVEWTTPRESVKKYILEWCVLSDKAPCITDWQQEDGTVHRTYLRGNLAESKCYLITVTPVYADGPGSPESIKAYLKQAPPSKGP: 523
                :   *  ******** ****** *   * **********  ***  ****** ** ** *** * ***** ****** * ***  ** ******* *  **:
8qy5_F_1     422:AYSVVNLKAFPKDNLLWVEWTPPPKPVSKYILEWCVLSENAPCVEDWQQEDATVNRTHLRGRLLESKCYQITVTPVFATGPGGSESLKAYLKQAAPARGP: 521
SecStr          :  B EEEEEEEETTEEEEEEE  SS  SEEEEEEEE  SSS    EEEEEETT  EEE  S   TT EEEEEEEEEETTEE B EEEEEESS    SS  :    
ExpBur          :eeebeebeeeeeeeebebbbeebeeebebbbbbbbebeeeeeeeeebbbbeeeeeebebeeebeeeebbebbbbbbbeebbbeeeeeebbbebeebeebb:    

queryA       524:TVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTIIGNETAVNVDSSHTEYTLSSLTSDTLYMVRMAAYTDEGGKDGPEFTFT: 609
                :************** *** *** ******** * ***  * *  * ************* **************************:
8qy5_F_1     522:TVRTKKVGKNEAVLAWDQIPVDDQNGFIRNYSISYRTSVGKEMVVHVDSSHTEYTLSSLSSDTLYMVRMAAYTDEGGKDGPEFTFT: 607
SecStr          : EEEEEE SS EEEEE    TTT  S   EEEEEEE SSS  EEEEEETT SEEEE S  TT  EEEEEEEEETTEEEE   EEE :    
ExpBur          :ebeeeeeeeeebbbbbeebeeebbebebeebbbbbebeeeeeeeeebeeeeeeeebeebeeeeebbbebbbebeeeeeebeeeebe:

Protein Model on 8qy5_F_1_E_1 (TEMPLATE: 8qy5 )

Input Residue Numbers for Focused Sites