[pdbjlvh2]Protein Model on 8dpu_L_1_PA

Protein Model on 8dpu_L_1_PA_1 (TEMPLATE: 8dpu )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:2]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(IL6RB_HUMAN)	L 1 (L)	polymer(polypeptide(L)) [283 aa]	Interleukin-11 receptor subunit alpha :I11RA_HUMAN
2	b		PA 1 (L)	non-polymer(NAG)	2-acetamido-2-deoxy-beta-D-glucopyranose	138E(D) 140K(E) 141K(N) 186Y(H) (identity: 0.0 %/23.6 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:8dpu_L_1 identity=23.6%

queryA       118:ITIISGLPPEKPKNLSCIVNEGKKMRCEWDGGRETHLETNF--TLKSEWATHKFADCKAKRDTPTSCTVD---------YSTVYFVNIEVWVEAENALGK: 206
                : *   * **  *   **         * *       * *                        *  *  *                     *   * ** :
8dpu_L_1      83:VTLQLGYPPARPV-VSCQAADYENFSCTWSPSQISGLPTRYLTSYRKKTVXXXXXXXXXPSTGPWPCPQDPLGAARCVVHGAEFWSQYRINVTEVNPLGA: 181
SecStr          :EEEEE       E-EEEE SSSS EEEEEE SS  SS  EEEEEEEE   ---------   S EE  BSSTT SEEEE S  SSSEEEEEEEEEETTEE:    
ExpBur          :bebebbeebbebe-bebebeebeebbbebeeeeebebeeebebbbebeee---------eeeeeeebeeeeeeeeebbbeebebebebebebebebeeee:    
Contact         :                    b bb                                                       b                    

queryA       207:VTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSI---KSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMK: 303
                : *             * **  * *         *   ** *          **   ***      **   *             *         *     :
8dpu_L_1     182:STR-LLDVSLQSILRPDPPQGLRVESVPGYPRRLRASWTYPASWPSQPHFLLKFRLQYRPAQHPAWSTVEPAGLEE-----VITDAVAGLPHAVRVSARD: 275
SecStr          :EEE-EEEEEHHHH      EEEEEEE TT TT EEEEEE  TTS   SSS EEEEEEEEETT  S EEE  STTEE-----EES   TT  EEEEEEEEE:    
ExpBur          :bee-eeebbbeeebebebbeebebeebeeeeeebebbbebbeebeeeeeeebebebbbebbeeeeeeeeebeeeee-----ebeebeeeeebbbbbbbeb:    

queryA       304:EDGKGYWSDWSEEASG: 319
                :    * ** ** ** *:
8dpu_L_1     276:FLDAGTWSTWSPEAWG: 291
SecStr          :TT  S        EEE:    
ExpBur          :eeebbebbeebeebeb:

Protein Model on 8dpu_L_1_PA_1 (TEMPLATE: 8dpu )

Input Residue Numbers for Focused Sites