Protein Model on 8d82_A_1_B_1 (TEMPLATE: 8d82 )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(IL6RB_HUMAN) A 1 (C) polymer(polypeptide(L)) [296 aa] Soluble interleukin-6 receptor subunit alpha :IL6RA_HUMAN
2 b B 1 (D) polymer(polypeptide(L)) [169 aa] Interleukin-6 :IL6_HUMAN 171D(N) 189V(F) 252V(F) 253I(Y) 254I(R) 303K(E) 304E 305D(F) 307K(Q) (identity: 11.1 %/28.2 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:8d82_A_1 identity=28.2%
queryA       118:ITIISGLPPEKPKNLSCIVNEG-KKMRCEWDGGRETHLETNFTLKSEWATHKFAD---------CKAKRDTPT-SCTVDY----STVYFVNIEVWVEAEN: 202
                :       *** *  ***          *** * * *      * *      **           *         **        *  * *   *      :
8d82_A_1      87:VHLLVDVPPEEPQ-LSCFRKSPLSNVVCEW-GPRST---PSLTTKAVLLVRKFQNSPAEDFQEPCQYSQESQKFSCQLAVPEGDSSFYIVSMCV----AS: 177
SecStr          :EEEEE        - EEEBSSTTS EEEEE-  SS ---  SS EEEEEEEEE SS  EEEEE  EE SSS SEEEEE   TT   EEEEEEEE----E :    
ExpBur          :bebebbeebeebe-bebebebbeeebebeb-ebeee---eeeebebbbbbeeeeeeeeeeeeeebeeeeeeeebebebebeeeeebebebbbbb----bb:    
Contact         :                      b                               b                          bb   b             

queryA       203:ALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSI--KSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIR: 300
                :  *   *    *       * ** *  *         *  **  *     *   *     **     *       *           *       *   *:
8d82_A_1     178:SVGSKFSKTQTFQGCGILQPDPPANITVTAVARNPRWLSVTWQDPHSWNSSFYRLRFELRYRAERSKTFTTWMVKDL---QHHCVIHDAWSGLRHVVQLR: 274
SecStr          :SS EEE   EEEETTTSB     EEEEEEE TT SS EEEEEE  TT   TTS EEEEEEEEESS    EEEE  TT--- SEEEESS  TTS EEEEEE:    
ExpBur          :bebeeebeeeebebeebbebeebeebebeeeeeeeeebebebeebeebeeeeeebebbbebbbeeeeeeeeeebeee---eeebebeebeeeeebbbbbe:    
Contact         :                                                   bbb                                              

queryA       301:CMKEDGKGYWSDWSEEASGITYED: 324
                :   * * * ** ** ** *     :
8d82_A_1     275:AQEEFGQGEWSEWSPEAMGTPWTE: 298
SecStr          :EEETT  S        EEE     :    
ExpBur          :bbbeeeeeeebeebeebebebeee:    
Contact         :  bbb b                                                                                             


Input Residue Numbers for Focused Sites

ex) 2,15,123