[pdbjlvh2]Protein Model on 8d7r_C_1_K

Protein Model on 8d7r_C_1_K_1 (TEMPLATE: 8d7r )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(IL6RB_HUMAN)	C 1 (B)	polymer(polypeptide(L)) [398 aa]	Leukemia inhibitory factor receptor :LIFR_HUMAN
2	b		K 1 (B)	non-polymer(NAG)	2-acetamido-2-deoxy-beta-D-glucopyranose	215D(N) 217V(T) 218Y(E) (identity: 0.0 %/29.5 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:8d7r_C_1 identity=29.5%

queryA        31:ISPESPVVQLHSNFTAVCVLKEKCMDYF--HVNANYIVWKTNHFTIPKEQYTIINRTASSVTFTDIASLNIQLTCNILTFGQLEQNVYGITIISGLPPEK: 128
                :  *   *    *  *  **  **       * *   *        *              * **                   * *  *  *  * **  :
8d7r_C_1     210:VFPQDKVILVGSDITFCCVSQEKVLSALIGHTNCPLIHLDGENVAIKIRNISVSASSGTNVVFTT------------------EDNIFGTVIFAGYPPDT: 291
SecStr          :EE SS EEETT  EEEEEE SS EEEEESSS  B  EE SSSEEEEEE S     SS EEEEEEE------------------SS EEEEEEEEE     :    
ExpBur          :bbeeeeebebeeebbbbbebeeebebbbeeeeeeeeeebeeebbbbebeebeebeeebeebebeb------------------eeeeeebebbbbeebee:    

queryA       129:PKNLSCIVNEGKKMRCEWDGGRETHL----ETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVW---VEAENALGKVTSDHINFDPVYKVK: 221
                :*  * *     *   * *  ** * *     *  **             *      *           * *       * * **   *  *      ** :
8d7r_C_1     292:PQQLNCETHDLKEIICSWNPGRVTALVGPRATSYTLVESFSGKYVRLKRAXXXXNESYQLLFQML--PNQEIYNFTLNAHNPLGRSQST-ILVNITEKVY: 388
SecStr          : EEEEEEBSSTTEEEEEEE  S  S  STT  EEEEE SSS  EEE    ----    B  EE  --TT   EEEEEEEE SS  EEEE-EEE TTTSB :    
ExpBur          :beebebebeeeeebebebeeeeebebeeeeebebbbebeeeeeeeebeee----eeebebebebe--eeeeebebbbbbebeeeebebe-eebebeeebb:    
Contact         :                                                                                             b bb   

queryA       222:PNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTV--QDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASG: 319
                :*  *    *      *   ** *  *     *     *    *  *   *          **  *    * * * * *****  *     ** **     :
8d7r_C_1     389:PHTPTSFKVKDIN--STAVKLSWHLPGNFAKINFLCEIEIK-KSNSVQEQRNVTIKGVENSSYLVALDKLNPYTLYTFRIRCSTETF-WKWSKWSNKKQH: 484
SecStr          :    BS      S--SSS     B  S  SSS B  EEEEE- SSS EEEEE  B    SSB      S    TT EEEEE  BSSS-         B  :    
ExpBur          :bebbeebebeeee--eebbebebebeeebeeeebebebbbe-eeeeeeeeeeeebeeeeeeebebebeeeeeeeebbbebebbbeee-eeebeebeeeee:    

queryA       320:ITYE: 323
                : * *:
8d7r_C_1     485:LTTE: 488
SecStr          :    :    
ExpBur          :beee:

Protein Model on 8d7r_C_1_K_1 (TEMPLATE: 8d7r )

Input Residue Numbers for Focused Sites